Variant report

Variant rs602579
Chromosome Location chr1:59036912-59036913
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:26 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59033800-59039800 Weak transcription Placenta Amnion Placenta Amnion
2 chr1:59034400-59037400 Enhancers Breast Myoepithelial Primary Cells Breast
3 chr1:59034400-59039400 Weak transcription H1 Cell Line embryonic stem cell
4 chr1:59034600-59039000 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr1:59034600-59039800 Enhancers Stomach Mucosa stomach
6 chr1:59034800-59038400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:59035000-59038200 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr1:59035000-59038600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr1:59035000-59039800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr1:59035200-59037000 Weak transcription H9 Cell Line embryonic stem cell
11 chr1:59035400-59037400 Weak transcription NHEK skin
12 chr1:59035800-59037200 Enhancers Brain Angular Gyrus brain
13 chr1:59035800-59037400 Enhancers Brain Cingulate Gyrus brain
14 chr1:59035800-59037800 Enhancers Brain Inferior Temporal Lobe brain
15 chr1:59035800-59038400 Enhancers HMEC breast
16 chr1:59035800-59041000 Enhancers Primary neutrophils fromperipheralblood blood
17 chr1:59036000-59037800 Enhancers Brain Hippocampus Middle brain
18 chr1:59036000-59038000 Enhancers Brain Substantia Nigra brain
19 chr1:59036200-59037000 Weak transcription Esophagus oesophagus
20 chr1:59036200-59037600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr1:59036200-59037600 Enhancers Cortex derived primary cultured neurospheres brain
22 chr1:59036200-59038600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:59036600-59037600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:59036600-59037600 Enhancers Brain Anterior Caudate brain
25 chr1:59036800-59037600 Enhancers Pancreas Pancrea
26 chr1:59036800-59038400 Weak transcription HSMMtube muscle

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