The 2.0 version of rSNPBase

Variant report

Variant rs6587821
Chromosome Location chr1:58975585-58975586
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:58931000-58977000 Weak transcription Rectal Smooth Muscle rectum
2 chr1:58931200-59010800 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:58932600-58977000 Weak transcription HSMMtube muscle
4 chr1:58933800-58984800 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr1:58934800-58976600 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr1:58934800-58994000 Weak transcription HSMM muscle
7 chr1:58944600-58976000 Weak transcription Muscle Satellite Cultured Cells --
8 chr1:58946200-58977000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr1:58946200-58979600 Weak transcription GM12878-XiMat blood
10 chr1:58946400-58993800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr1:58946600-58977000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr1:58947600-58977000 Weak transcription Brain Angular Gyrus brain
13 chr1:58948400-58977000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:58950200-58976600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr1:58952800-58977200 Weak transcription Small Intestine intestine
16 chr1:58953200-58986000 Weak transcription Colonic Mucosa Colon
17 chr1:58953600-58999200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:58955000-58976600 Weak transcription Brain Inferior Temporal Lobe brain
19 chr1:58955000-58976800 Weak transcription Fetal Kidney kidney
20 chr1:58955000-58986400 Weak transcription Gastric stomach
21 chr1:58955000-58988200 Weak transcription Fetal Muscle Trunk muscle
22 chr1:58960800-58976600 Weak transcription Brain Anterior Caudate brain
23 chr1:58963800-58999000 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr1:58964200-58978600 Weak transcription HUES64 Cell Line embryonic stem cell
25 chr1:58964800-58986400 Weak transcription K562 blood
26 chr1:58966400-58976800 Weak transcription NHEK skin
27 chr1:58966600-59010600 Weak transcription Placenta Placenta
28 chr1:58967600-59010600 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr1:58968200-58986400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr1:58968400-58984600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
31 chr1:58969200-58977000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr1:58970800-58976800 Weak transcription Sigmoid Colon Sigmoid Colon
33 chr1:58971800-58976600 Weak transcription Brain Hippocampus Middle brain
34 chr1:58972000-58977000 Weak transcription Fetal Intestine Small intestine
35 chr1:58972200-58977200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:58972400-58976800 Weak transcription Psoas Muscle Psoas
37 chr1:58973200-58976600 Weak transcription Brain Germinal Matrix brain
38 chr1:58973600-58976600 Strong transcription Primary B cells from cord blood blood
39 chr1:58973800-58980600 Strong transcription Primary B cells from peripheral blood blood
40 chr1:58974000-58975600 Strong transcription Breast Myoepithelial Primary Cells Breast
41 chr1:58974000-58975600 Strong transcription Duodenum Smooth Muscle Duodenum
42 chr1:58974400-58978600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr1:58974600-58976600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr1:58974600-58977000 Weak transcription Lung lung
45 chr1:58974600-58977000 Weak transcription Thymus Thymus
46 chr1:58974600-58987600 Weak transcription Right Ventricle heart
47 chr1:58974800-58975600 Weak transcription Pancreatic Islets Pancreatic Islet
48 chr1:58974800-58976400 Weak transcription Brain Cingulate Gyrus brain
49 chr1:58974800-58976600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:58974800-58976600 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015