The 2.0 version of rSNPBase

Variant report

Variant rs17117742
Chromosome Location chr1:59009099-59009100
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:58931200-59010800 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr1:58966600-59010600 Weak transcription Placenta Placenta
3 chr1:58967600-59010600 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr1:58974800-59010800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr1:58974800-59011800 Weak transcription Spleen Spleen
6 chr1:58975000-59010600 Weak transcription Stomach Smooth Muscle stomach
7 chr1:58975000-59010800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr1:58977200-59010800 Weak transcription Brain Angular Gyrus brain
9 chr1:58977200-59011400 Weak transcription Ovary ovary
10 chr1:58977400-59010400 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:58977400-59010600 Weak transcription Aorta Aorta
12 chr1:58977400-59010600 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:58977400-59010600 Weak transcription Psoas Muscle Psoas
14 chr1:58977400-59011400 Weak transcription Left Ventricle heart
15 chr1:58977400-59011400 Weak transcription Lung lung
16 chr1:58977600-59011000 Weak transcription Fetal Adrenal Gland Adrenal Gland
17 chr1:58978200-59010200 Weak transcription Dnd41 blood
18 chr1:58979000-59011400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr1:58985200-59010600 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr1:58985800-59010400 Weak transcription Primary T helper naive cells fromperipheralblood blood
21 chr1:58985800-59010600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr1:58989200-59010600 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr1:58989400-59010600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
24 chr1:58990800-59011000 Weak transcription Primary neutrophils fromperipheralblood blood
25 chr1:58992400-59010800 Weak transcription Adipose Nuclei Adipose
26 chr1:58993000-59010400 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr1:58993000-59010600 Weak transcription Liver Liver
28 chr1:58994200-59011000 Weak transcription HSMM muscle
29 chr1:58994400-59010800 Weak transcription NHEK skin
30 chr1:58994600-59010600 Weak transcription NHDF-Ad bronchial
31 chr1:58995000-59010600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr1:58996200-59011000 Weak transcription Primary hematopoietic stem cells blood
33 chr1:58996600-59010600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:58997200-59010200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr1:58997200-59010800 Weak transcription HUES64 Cell Line embryonic stem cell
36 chr1:58997800-59010600 Weak transcription Primary monocytes fromperipheralblood blood
37 chr1:58998200-59010600 Weak transcription Monocytes-CD14+_RO01746 blood
38 chr1:58998200-59010800 Weak transcription GM12878-XiMat blood
39 chr1:58999000-59010600 Weak transcription Osteobl bone
40 chr1:59001200-59011400 Weak transcription Pancreas Pancrea
41 chr1:59001800-59011200 Weak transcription Right Ventricle heart
42 chr1:59002400-59010600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr1:59002600-59010600 Weak transcription Primary B cells from peripheral blood blood
44 chr1:59004200-59010800 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr1:59004600-59009600 Weak transcription Primary T helper cells fromperipheralblood blood
46 chr1:59004800-59010600 Weak transcription Primary T cells from cord blood blood
47 chr1:59005000-59010200 Weak transcription Primary T cells fromperipheralblood blood
48 chr1:59005000-59010600 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr1:59005000-59011200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr1:59005600-59010200 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015