The 2.0 version of rSNPBase

Variant report

Variant rs2406784
Chromosome Location chr1:59011987-59011988
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59010600-59013000 Active TSS Pancreatic Islets Pancreatic Islet
2 chr1:59010800-59012800 Active TSS HSMMtube muscle
3 chr1:59011000-59012600 Active TSS GM12878-XiMat blood
4 chr1:59011000-59012800 Active TSS Aorta Aorta
5 chr1:59011000-59013000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:59011000-59013000 Active TSS Stomach Smooth Muscle stomach
7 chr1:59011000-59013200 Active TSS Brain Angular Gyrus brain
8 chr1:59011200-59012400 Active TSS Small Intestine intestine
9 chr1:59011200-59012600 Active TSS HUES64 Cell Line embryonic stem cell
10 chr1:59011200-59012600 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:59011200-59012800 Active TSS ES-I3 Cell Line embryonic stem cell
12 chr1:59011200-59012800 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr1:59011200-59012800 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:59011200-59012800 Active TSS Duodenum Smooth Muscle Duodenum
15 chr1:59011200-59012800 Active TSS Fetal Muscle Trunk muscle
16 chr1:59011200-59012800 Active TSS Right Ventricle heart
17 chr1:59011200-59013000 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr1:59011200-59013000 Active TSS Fetal Brain Male brain
19 chr1:59011200-59013000 Active TSS Fetal Brain Female brain
20 chr1:59011200-59013000 Active TSS Fetal Kidney kidney
21 chr1:59011200-59013000 Active TSS Fetal Stomach stomach
22 chr1:59011200-59013000 Active TSS Psoas Muscle Psoas
23 chr1:59011200-59013000 Active TSS Right Atrium heart
24 chr1:59011200-59013000 Active TSS Thymus Thymus
25 chr1:59011200-59013000 Active TSS NHLF lung
26 chr1:59011200-59013200 Active TSS Breast Myoepithelial Primary Cells Breast
27 chr1:59011200-59013200 Active TSS Rectal Mucosa Donor 29 rectum
28 chr1:59011200-59013200 Active TSS A549 lung
29 chr1:59011400-59012000 Active TSS ES-WA7 Cell Line embryonic stem cell
30 chr1:59011400-59012000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
31 chr1:59011400-59012000 Flanking Active TSS Primary T cells fromperipheralblood blood
32 chr1:59011400-59012000 Flanking Active TSS Skeletal Muscle Female skeletal muscle
33 chr1:59011400-59012400 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr1:59011400-59012400 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:59011400-59012400 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
36 chr1:59011400-59012400 Active TSS Lung lung
37 chr1:59011400-59012400 Active TSS Sigmoid Colon Sigmoid Colon
38 chr1:59011400-59012600 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr1:59011400-59012600 Active TSS iPS DF 19.11 Cell Line embryonic stem cell
40 chr1:59011400-59012600 Active TSS Placenta Amnion Placenta Amnion
41 chr1:59011400-59012800 Active TSS H9 Cell Line embryonic stem cell
42 chr1:59011400-59012800 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr1:59011400-59012800 Active TSS iPS-20b Cell Line embryonic stem cell
44 chr1:59011400-59012800 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
45 chr1:59011400-59012800 Active TSS Colon Smooth Muscle Colon
46 chr1:59011400-59012800 Active TSS Fetal Intestine Small intestine
47 chr1:59011400-59012800 Active TSS Left Ventricle heart
48 chr1:59011400-59012800 Active TSS Ovary ovary
49 chr1:59011400-59012800 Active TSS Pancreas Pancrea
50 chr1:59011400-59012800 Active TSS Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015