The 2.0 version of rSNPBase

Variant report

Variant rs59924197
Chromosome Location chr1:59045242-59045243
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59043200-59047400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:59043200-59049200 Weak transcription Gastric stomach
3 chr1:59043400-59045800 Weak transcription Placenta Placenta
4 chr1:59043400-59049000 Weak transcription Pancreas Pancrea
5 chr1:59043400-59049800 Weak transcription Ovary ovary
6 chr1:59043600-59049200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:59043800-59049000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr1:59043800-59049000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:59043800-59049200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr1:59043800-59049200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr1:59044000-59045400 Weak transcription Brain Substantia Nigra brain
12 chr1:59044000-59046200 Enhancers Primary neutrophils fromperipheralblood blood
13 chr1:59044000-59046400 Weak transcription Brain Inferior Temporal Lobe brain
14 chr1:59044000-59049000 Weak transcription Fetal Lung lung
15 chr1:59044000-59049000 Weak transcription Osteobl bone
16 chr1:59044000-59049200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr1:59044000-59049200 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr1:59044000-59049400 Weak transcription Placenta Amnion Placenta Amnion
19 chr1:59044000-59049800 Weak transcription Brain Angular Gyrus brain
20 chr1:59044200-59045400 Weak transcription Brain Hippocampus Middle brain
21 chr1:59044200-59045400 Enhancers HMEC breast
22 chr1:59044200-59045600 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr1:59044200-59046800 Weak transcription HUVEC blood vessel
24 chr1:59044200-59049000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:59044200-59049000 Weak transcription Spleen Spleen
26 chr1:59044200-59049200 Weak transcription Adipose Nuclei Adipose
27 chr1:59044400-59045800 Weak transcription GM12878-XiMat blood
28 chr1:59044400-59046000 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr1:59044400-59046200 Enhancers NHEK skin
30 chr1:59044400-59049000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:59044400-59049000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr1:59044400-59049000 Weak transcription Stomach Mucosa stomach
33 chr1:59044800-59045600 Bivalent Enhancer Monocytes-CD14+_RO01746 blood
34 chr1:59044800-59046200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:59045000-59045400 Enhancers Hela-S3 cervix
36 chr1:59045200-59045400 Bivalent Enhancer Brain Anterior Caudate brain
37 chr1:59045200-59045600 Enhancers Brain Cingulate Gyrus brain
38 chr1:59045200-59046000 Enhancers Lung lung
39 chr1:59045200-59046200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015