The 2.0 version of rSNPBase

Variant report

Variant rs7547070
Chromosome Location chr1:59044605-59044606
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59043200-59047400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:59043200-59049200 Weak transcription Gastric stomach
3 chr1:59043400-59045200 Weak transcription Lung lung
4 chr1:59043400-59045800 Weak transcription Placenta Placenta
5 chr1:59043400-59049000 Weak transcription Pancreas Pancrea
6 chr1:59043400-59049800 Weak transcription Ovary ovary
7 chr1:59043600-59049200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:59043800-59049000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr1:59043800-59049000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr1:59043800-59049200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr1:59043800-59049200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:59044000-59045400 Weak transcription Brain Substantia Nigra brain
13 chr1:59044000-59046200 Enhancers Primary neutrophils fromperipheralblood blood
14 chr1:59044000-59046400 Weak transcription Brain Inferior Temporal Lobe brain
15 chr1:59044000-59049000 Weak transcription Fetal Lung lung
16 chr1:59044000-59049000 Weak transcription Osteobl bone
17 chr1:59044000-59049200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:59044000-59049200 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr1:59044000-59049400 Weak transcription Placenta Amnion Placenta Amnion
20 chr1:59044000-59049800 Weak transcription Brain Angular Gyrus brain
21 chr1:59044200-59045200 Weak transcription Brain Cingulate Gyrus brain
22 chr1:59044200-59045400 Weak transcription Brain Hippocampus Middle brain
23 chr1:59044200-59045400 Enhancers HMEC breast
24 chr1:59044200-59045600 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr1:59044200-59046800 Weak transcription HUVEC blood vessel
26 chr1:59044200-59049000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:59044200-59049000 Weak transcription Spleen Spleen
28 chr1:59044200-59049200 Weak transcription Adipose Nuclei Adipose
29 chr1:59044400-59044800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:59044400-59045200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:59044400-59045800 Weak transcription GM12878-XiMat blood
32 chr1:59044400-59046000 Enhancers Breast Myoepithelial Primary Cells Breast
33 chr1:59044400-59046200 Enhancers NHEK skin
34 chr1:59044400-59049000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr1:59044400-59049000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:59044400-59049000 Weak transcription Stomach Mucosa stomach
37 chr1:59044600-59044800 Enhancers Hela-S3 cervix

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Last update: Aug 31, 2015