The 2.0 version of rSNPBase

Variant report

Variant rs232844
Chromosome Location chr1:59039438-59039439
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59033800-59039800 Weak transcription Placenta Amnion Placenta Amnion
2 chr1:59034600-59039800 Enhancers Stomach Mucosa stomach
3 chr1:59035000-59039800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr1:59035800-59041000 Enhancers Primary neutrophils fromperipheralblood blood
5 chr1:59037000-59039800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr1:59037600-59039600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr1:59037800-59039600 Weak transcription Esophagus oesophagus
8 chr1:59038000-59040200 Enhancers HUES48 Cell Line embryonic stem cell
9 chr1:59038000-59041200 Weak transcription Brain Substantia Nigra brain
10 chr1:59038200-59039600 Enhancers ES-I3 Cell Line embryonic stem cell
11 chr1:59038200-59040200 Flanking Active TSS NHEK skin
12 chr1:59038400-59039800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:59038400-59039800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:59038400-59039800 Bivalent Enhancer HUES6 Cell Line embryonic stem cell
15 chr1:59038400-59043600 Active TSS Breast Myoepithelial Primary Cells Breast
16 chr1:59038600-59039800 Bivalent Enhancer HUES64 Cell Line embryonic stem cell
17 chr1:59038600-59040200 Flanking Active TSS GM12878-XiMat blood
18 chr1:59038600-59041200 Enhancers Hela-S3 cervix
19 chr1:59038800-59039800 Weak transcription Pancreas Pancrea
20 chr1:59038800-59040000 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
21 chr1:59038800-59040200 Enhancers Fetal Lung lung
22 chr1:59038800-59040600 Enhancers HUVEC blood vessel
23 chr1:59039000-59039600 Enhancers HMEC breast
24 chr1:59039000-59039800 Bivalent Enhancer ES-WA7 Cell Line embryonic stem cell
25 chr1:59039000-59039800 Enhancers iPS-20b Cell Line embryonic stem cell
26 chr1:59039000-59039800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
27 chr1:59039000-59040000 Enhancers Primary T regulatory cells fromperipheralblood blood
28 chr1:59039000-59040200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr1:59039200-59039600 Enhancers Primary T killer memory cells from peripheral blood blood
30 chr1:59039200-59039800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
31 chr1:59039200-59039800 Enhancers Primary T helper 17 cells PMA-I stimulated --
32 chr1:59039200-59040000 Enhancers Primary T helper cells PMA-I stimulated --
33 chr1:59039200-59040000 Bivalent Enhancer Primary T helper cells fromperipheralblood blood
34 chr1:59039200-59040200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
35 chr1:59039400-59039600 Enhancers H1 Cell Line embryonic stem cell
36 chr1:59039400-59039600 Enhancers H9 Cell Line embryonic stem cell
37 chr1:59039400-59039600 Enhancers A549 lung
38 chr1:59039400-59039800 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr1:59039400-59040000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr1:59039400-59040000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr1:59039400-59040000 Enhancers Primary T helper naive cells from peripheral blood blood
42 chr1:59039400-59040000 Bivalent Enhancer HepG2 liver

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Last update: Aug 31, 2015