Variant report

Variant	rs526060
Chromosome Location	chr11:94407143-94407144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10765693	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831262	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831263	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831265	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831266	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020878	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020889	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020890	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020891	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020893	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020894	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11606983	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4304729	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479678	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504726	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526187	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533172	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs533222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs555620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556481	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558291	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611262	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs639794	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs640686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671861	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672375	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672430	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673654	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:94400400-94409600	Weak transcription	K562	blood
3	chr11:94403800-94407200	Weak transcription	Right Atrium	heart
4	chr11:94404400-94413000	Enhancers	HMEC	breast
5	chr11:94405000-94407600	Enhancers	Fetal Muscle Trunk	muscle
6	chr11:94405000-94410400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:94405200-94410600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:94405400-94415600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:94405600-94407200	Weak transcription	HSMMtube	muscle
10	chr11:94405800-94408800	Enhancers	Fetal Muscle Leg	muscle
11	chr11:94406200-94407200	Weak transcription	Pancreas	Pancrea
12	chr11:94406200-94411600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:94406400-94411200	Weak transcription	Aorta	Aorta
14	chr11:94406400-94411200	Enhancers	NHEK	skin
15	chr11:94406600-94407200	Enhancers	Adipose Nuclei	Adipose
16	chr11:94406600-94407800	Enhancers	Rectal Smooth Muscle	rectum
17	chr11:94406600-94409000	Enhancers	Colon Smooth Muscle	Colon
18	chr11:94406600-94411200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:94406600-94411600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:94406600-94412400	Enhancers	Psoas Muscle	Psoas
21	chr11:94406800-94407400	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr11:94406800-94409200	Enhancers	Fetal Brain Male	brain
23	chr11:94406800-94413000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:94407000-94407400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr11:94407000-94407600	Enhancers	Esophagus	oesophagus
26	chr11:94407000-94407600	Enhancers	Stomach Smooth Muscle	stomach
27	chr11:94407000-94407800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:94407000-94409600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:94407000-94410800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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