Variant report

Variant	rs673654
Chromosome Location	chr11:94405109-94405110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10765693	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831262	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831263	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831265	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831266	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020878	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020889	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020890	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020891	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020893	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020894	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11606983	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4304729	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479678	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs504726	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526060	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs526187	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533172	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs533222	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs555620	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556481	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558291	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559018	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560871	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581570	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs611262	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs639794	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs640686	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671861	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672375	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672430	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94395400-94410800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:94400400-94409600	Weak transcription	K562	blood
3	chr11:94403000-94406800	Weak transcription	Fetal Brain Male	brain
4	chr11:94403600-94405400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr11:94403800-94405400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr11:94403800-94407200	Weak transcription	Right Atrium	heart
7	chr11:94404000-94405600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr11:94404200-94406000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:94404400-94405600	Enhancers	HSMMtube	muscle
10	chr11:94404400-94413000	Enhancers	HMEC	breast
11	chr11:94404600-94405200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:94404600-94405200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:94404600-94405200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:94404600-94405200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:94404600-94405200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:94404600-94405200	ZNF genes & repeats	Gastric	stomach
17	chr11:94404600-94405400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:94404600-94405400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:94404600-94405400	Enhancers	NHEK	skin
20	chr11:94404600-94406000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:94404600-94406000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:94404600-94406000	Enhancers	Psoas Muscle	Psoas
23	chr11:94404600-94406200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:94404800-94405800	ZNF genes & repeats	Fetal Muscle Leg	muscle
25	chr11:94404800-94406000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr11:94405000-94405200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr11:94405000-94405200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:94405000-94405600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:94405000-94406000	Genic enhancers	Esophagus	oesophagus
30	chr11:94405000-94407600	Enhancers	Fetal Muscle Trunk	muscle
31	chr11:94405000-94410400	Weak transcription	Placenta Amnion	Placenta Amnion

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