Variant report

Variant	rs526404
Chromosome Location	chr22:27667158-27667159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs483136	1.00[AMR][1000 genomes]
rs527223	1.00[AMR][1000 genomes]
rs530083	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs541153	1.00[AMR][1000 genomes]
rs545268	1.00[AMR][1000 genomes]
rs553032	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs561124	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs562230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs562896	1.00[AMR][1000 genomes]
rs57875447	1.00[AMR][1000 genomes]
rs73428210	1.00[AMR][1000 genomes]
rs73428213	1.00[AMR][1000 genomes]
rs849355	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917333	chr22:26931825-27692024	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	142 gene(s)	inside rSNPs	diseases
2	esv34168	chr22:27289097-27678031	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv834166	chr22:27628570-27814359	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27665200-27670000	Weak transcription	Spleen	Spleen
2	chr22:27666000-27667200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr22:27666000-27669400	Enhancers	Brain Germinal Matrix	brain
4	chr22:27666200-27667200	Enhancers	Esophagus	oesophagus
5	chr22:27666200-27667200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr22:27666200-27667400	Enhancers	Ovary	ovary
7	chr22:27666400-27667200	Enhancers	Fetal Heart	heart
8	chr22:27666400-27671800	Enhancers	Fetal Brain Male	brain
9	chr22:27666600-27667200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr22:27666600-27667200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr22:27666600-27667200	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr22:27666800-27667200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr22:27666800-27667200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr22:27666800-27667200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr22:27666800-27667200	Enhancers	Pancreas	Pancrea
16	chr22:27666800-27669000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr22:27667000-27667200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr22:27667000-27667200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr22:27667000-27667200	Bivalent Enhancer	Left Ventricle	heart
20	chr22:27667000-27667200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
21	chr22:27667000-27667200	Bivalent Enhancer	HSMM	muscle
22	chr22:27667000-27668400	Weak transcription	Fetal Brain Female	brain
23	chr22:27667000-27668600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr22:27667000-27668600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr22:27667000-27668800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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