Variant report

Variant	rs562896
Chromosome Location	chr22:27702428-27702429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs483136	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs526404	1.00[AMR][1000 genomes]
rs527223	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs530083	1.00[AMR][1000 genomes]
rs540578	0.92[AFR][1000 genomes]
rs541153	1.00[AMR][1000 genomes]
rs545268	1.00[AMR][1000 genomes]
rs553032	1.00[AMR][1000 genomes]
rs560197	0.92[AFR][1000 genomes]
rs561124	1.00[AMR][1000 genomes]
rs562230	1.00[AMR][1000 genomes]
rs57875447	1.00[AMR][1000 genomes]
rs73428210	1.00[AMR][1000 genomes]
rs73428213	1.00[AMR][1000 genomes]
rs849355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs849363	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834166	chr22:27628570-27814359	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27697000-27702600	Weak transcription	Fetal Brain Female	brain
2	chr22:27697000-27705800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:27698000-27702800	Weak transcription	Fetal Brain Male	brain
4	chr22:27698600-27706200	Weak transcription	Brain Germinal Matrix	brain
5	chr22:27702200-27702800	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr22:27702200-27703600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr22:27702400-27703400	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links