Variant report

Variant	rs527098
Chromosome Location	chrX:78210388-78210389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs536789	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78202400-78213600	Weak transcription	Fetal Thymus	thymus
2	chrX:78205400-78216000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chrX:78205600-78216200	Weak transcription	Primary hematopoietic stem cells	blood
4	chrX:78206400-78217200	Genic enhancers	Primary B cells from peripheral blood	blood
5	chrX:78206600-78212000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chrX:78206800-78211400	Enhancers	Primary B cells from cord blood	blood
7	chrX:78206800-78215600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chrX:78207000-78210400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chrX:78207400-78210800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chrX:78207800-78212400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
11	chrX:78208400-78211000	Weak transcription	Primary T cells from cord blood	blood
12	chrX:78208600-78210800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chrX:78208600-78210800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chrX:78209200-78212400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chrX:78209200-78215600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chrX:78209800-78210600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chrX:78209800-78211000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chrX:78209800-78214600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chrX:78210000-78215000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chrX:78210000-78215400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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