Variant report

Variant	rs536789
Chromosome Location	chrX:78200361-78200362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:78199658-78203096	GM12878	blood:	n/a	n/a
2	NFYB	chrX:78200254-78201255	GM12878	blood:	n/a	n/a
3	POLR2A	chrX:78199889-78202383	GM18951	blood:	n/a	n/a
4	CUX1	chrX:78199859-78200381	GM12878	blood:	n/a	chrX:78200213-78200222
5	CHD1	chrX:78200145-78204143	GM12878	blood:	n/a	n/a
6	POLR2A	chrX:78199998-78202548	GM12878	blood:	n/a	n/a
7	CHD2	chrX:78200269-78201298	GM12878	blood:	n/a	n/a
8	BCLAF1	chrX:78200225-78201209	GM12878	blood:	n/a	n/a
9	PML	chrX:78199841-78201335	GM12878	blood:	n/a	n/a
10	TBP	chrX:78199932-78201562	GM12878	blood:	n/a	n/a
11	POLR2A	chrX:78199744-78207420	GM12891	blood:	n/a	n/a
12	POLR2A	chrX:78199759-78202575	GM18505	blood:	n/a	n/a
13	POLR2A	chrX:78199649-78203758	GM12878	blood:	n/a	n/a
14	MTA3	chrX:78199757-78202048	GM12878	blood:	n/a	n/a
15	TBL1XR1	chrX:78199923-78201243	GM12878	blood:	n/a	n/a
16	SMC3	chrX:78200349-78201366	GM12878	blood:	n/a	n/a
17	POLR2A	chrX:78199605-78201301	GM15510	blood:	n/a	n/a
18	NFIC	chrX:78199314-78201352	GM12878	blood:	n/a	n/a
19	POLR2A	chrX:78199746-78202814	GM12878	blood:	n/a	n/a
20	ZNF143	chrX:78200326-78201097	GM12878	blood:	n/a	n/a
21	POLR2A	chrX:78199962-78203012	GM12892	blood:	n/a	n/a
22	POLR2A	chrX:78200344-78201954	GM12892	blood:	n/a	n/a
23	BHLHE40	chrX:78200276-78201168	GM12878	blood:	n/a	n/a
24	POLR2A	chrX:78199895-78202792	GM12892	blood:	n/a	n/a
25	POLR2A	chrX:78199847-78202351	GM19099	blood:	n/a	n/a
26	MXI1	chrX:78200184-78201378	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
P2RY10	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs527098	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394349	chrX:77977388-78779139	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:78197200-78200400	Enhancers	Primary B cells from peripheral blood	blood
2	chrX:78197200-78200400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chrX:78197200-78200400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chrX:78197600-78205200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chrX:78197800-78200800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chrX:78198600-78200400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chrX:78199200-78200400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chrX:78199200-78200800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chrX:78199200-78201200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chrX:78199400-78200400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chrX:78199400-78200600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chrX:78199400-78200800	Flanking Active TSS	GM12878-XiMat	blood
13	chrX:78199600-78200400	Enhancers	Primary T cells fromperipheralblood	blood
14	chrX:78199600-78200400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chrX:78199600-78200800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chrX:78199800-78200400	Enhancers	Primary T cells from cord blood	blood
17	chrX:78199800-78200800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chrX:78200000-78200600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chrX:78200000-78201400	Enhancers	Primary hematopoietic stem cells	blood
20	chrX:78200200-78200600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chrX:78200200-78202000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chrX:78200200-78203800	Active TSS	Primary B cells from cord blood	blood
23	chrX:78200200-78204200	Active TSS	Primary T helper naive cells fromperipheralblood	blood

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