Variant report

Variant	rs527414341
Chromosome Location	chr15:92587292-92587293
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92495196..92498509-chr15:92585959..92588143,4	MCF-7	breast:
2	chr15:92578004..92579721-chr15:92585811..92587645,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1049753	chr15:92587172-92600399	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92579400-92591200	Weak transcription	Ovary	ovary
2	chr15:92581000-92593400	Weak transcription	Aorta	Aorta
3	chr15:92583800-92587400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr15:92583800-92588200	Enhancers	Right Atrium	heart
5	chr15:92584000-92588000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:92584600-92587400	Weak transcription	Psoas Muscle	Psoas
7	chr15:92584600-92592600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:92585200-92587400	Enhancers	Lung	lung
9	chr15:92585200-92588200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:92585200-92588200	Enhancers	Left Ventricle	heart
11	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain
12	chr15:92585600-92587600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:92585600-92591400	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:92585800-92587800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:92585800-92588200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:92585800-92592600	Weak transcription	Brain Anterior Caudate	brain
17	chr15:92586000-92588000	Enhancers	NHEK	skin
18	chr15:92586000-92591000	Weak transcription	Brain Angular Gyrus	brain
19	chr15:92586000-92593200	Weak transcription	Gastric	stomach
20	chr15:92586200-92587400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:92586200-92587800	Enhancers	HMEC	breast
22	chr15:92586200-92588200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:92586200-92591200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr15:92586400-92591000	Weak transcription	Brain Substantia Nigra	brain
25	chr15:92586600-92588000	Enhancers	Primary hematopoietic stem cells	blood
26	chr15:92586600-92588200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr15:92586600-92588200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:92586800-92588000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:92586800-92592200	Weak transcription	Spleen	Spleen
30	chr15:92587000-92587600	Enhancers	Primary T cells fromperipheralblood	blood
31	chr15:92587000-92588200	Enhancers	Esophagus	oesophagus
32	chr15:92587200-92587400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:92587200-92587400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr15:92587200-92587400	Bivalent Enhancer	Fetal Muscle Leg	muscle
35	chr15:92587200-92587600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr15:92587200-92588000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:92587200-92588000	Enhancers	Right Ventricle	heart
38	chr15:92587200-92588200	Enhancers	Fetal Thymus	thymus
39	chr15:92587200-92589000	Weak transcription	Fetal Heart	heart

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