Variant report

Variant	rs527619643
Chromosome Location	chr9:101891908-101891909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101865542..101868917-chr9:101887238..101894962,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1792736	chr9:101891126-101909372	Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101868400-101896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:101868600-101894400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:101870000-101908600	Weak transcription	Brain Germinal Matrix	brain
4	chr9:101875600-101894600	Weak transcription	Spleen	Spleen
5	chr9:101876600-101904200	Weak transcription	Liver	Liver
6	chr9:101878000-101897400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:101878800-101892400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:101878800-101903200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:101882000-101892600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr9:101882000-101893400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:101882000-101893400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr9:101882000-101895000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr9:101882200-101901400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr9:101882200-101903000	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:101882400-101893200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:101882400-101894600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr9:101883000-101900000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:101884400-101892800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:101884600-101897200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr9:101884800-101894400	Weak transcription	Aorta	Aorta
21	chr9:101885200-101896800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:101885200-101901600	Weak transcription	A549	lung
23	chr9:101886400-101892400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:101887200-101893600	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr9:101887600-101892400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr9:101887800-101892800	Enhancers	HMEC	breast
27	chr9:101888000-101893800	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr9:101888200-101907000	Weak transcription	HepG2	liver
29	chr9:101888400-101896600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr9:101889200-101892800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr9:101889400-101892800	Genic enhancers	K562	blood
32	chr9:101889400-101904000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:101889600-101892400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr9:101889600-101901000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:101889800-101892400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:101889800-101892800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr9:101889800-101904400	Weak transcription	Lung	lung
38	chr9:101890000-101892000	Enhancers	Colon Smooth Muscle	Colon
39	chr9:101890000-101892400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:101890000-101894400	Weak transcription	Esophagus	oesophagus
41	chr9:101890000-101894600	Weak transcription	Left Ventricle	heart
42	chr9:101890000-101897800	Weak transcription	Small Intestine	intestine
43	chr9:101890000-101900800	Weak transcription	Fetal Intestine Small	intestine
44	chr9:101890000-101914200	Weak transcription	Pancreas	Pancrea
45	chr9:101890200-101892400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr9:101890200-101892600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr9:101890200-101892800	Enhancers	Fetal Thymus	thymus
48	chr9:101890200-101896600	Weak transcription	NHLF	lung
49	chr9:101890200-101904800	Weak transcription	Fetal Intestine Large	intestine
50	chr9:101890200-101907600	Weak transcription	Gastric	stomach

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