Variant report

Variant	rs527668004
Chromosome Location	chr19:37710207-37710208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr19:37708650-37710368	K562	blood:	n/a	chr19:37710213-37710224 chr19:37709381-37709392
2	CEBPB	chr19:37710160-37710295	H1-hESC	embryonic stem cell:	n/a	chr19:37710213-37710224
3	CEBPB	chr19:37710127-37710354	HepG2	liver:	n/a	chr19:37710213-37710224
4	CEBPB	chr19:37710158-37710361	A549	lung:	n/a	chr19:37710213-37710224

No.	Distal block	Cell Line	Cell type
1	chr19:37328417..37330040-chr19:37708183..37710302,2	MCF-7	breast:
2	chr19:37662285..37665074-chr19:37707652..37711059,3	K562	blood:
3	chr19:37699250..37701731-chr19:37707688..37710566,5	MCF-7	breast:
4	chr19:37699969..37703002-chr19:37707384..37710417,4	MCF-7	breast:
5	chr19:37709557..37710298-chr4:177325105..177325952,2	MCF-7	breast:
6	chr19:37696561..37699381-chr19:37708371..37710219,3	MCF-7	breast:
7	chr19:37700501..37704644-chr19:37706690..37710773,7	K562	blood:

Variant related genes	Relation type
ZNF585B	TF binding region
ENSG00000245680	Chromatin interaction
ENSG00000197863	Chromatin interaction
ENSG00000196967	Chromatin interaction
ENSG00000267360	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv961287	chr19:37708789-37742224	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37708000-37710400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:37708200-37710400	Active TSS	HSMM	muscle
3	chr19:37708800-37710600	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
4	chr19:37709000-37710400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr19:37709200-37710400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:37709200-37710600	Transcr. at gene 5' and 3'	Dnd41	blood
7	chr19:37709400-37710600	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr19:37709600-37714800	ZNF genes & repeats	A549	lung
9	chr19:37709800-37710400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr19:37709800-37711400	Enhancers	Spleen	Spleen
11	chr19:37709800-37711400	ZNF genes & repeats	GM12878-XiMat	blood
12	chr19:37709800-37718400	Weak transcription	Aorta	Aorta
13	chr19:37710000-37710400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr19:37710000-37710400	Weak transcription	Primary B cells from cord blood	blood
15	chr19:37710000-37710400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr19:37710000-37710400	Enhancers	Ovary	ovary
17	chr19:37710000-37710600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr19:37710000-37710600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr19:37710000-37710600	Genic enhancers	Esophagus	oesophagus
20	chr19:37710000-37710600	Enhancers	Fetal Brain Male	brain
21	chr19:37710000-37710600	Enhancers	Gastric	stomach
22	chr19:37710000-37710600	Enhancers	Lung	lung
23	chr19:37710000-37710600	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr19:37710000-37710800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr19:37710000-37711600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr19:37710000-37711800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr19:37710000-37716000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr19:37710000-37716000	Weak transcription	Fetal Thymus	thymus
29	chr19:37710000-37717000	Weak transcription	NH-A	brain
30	chr19:37710000-37717200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr19:37710000-37718400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:37710000-37720800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr19:37710000-37721000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr19:37710000-37728600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr19:37710200-37710400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr19:37710200-37710400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr19:37710200-37710400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr19:37710200-37710400	Genic enhancers	Primary T cells fromperipheralblood	blood
39	chr19:37710200-37710400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr19:37710200-37710400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr19:37710200-37710400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr19:37710200-37710400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr19:37710200-37710400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr19:37710200-37710400	Enhancers	Liver	Liver
45	chr19:37710200-37710400	Enhancers	Fetal Brain Female	brain
46	chr19:37710200-37710400	Weak transcription	Fetal Intestine Large	intestine
47	chr19:37710200-37710400	Genic enhancers	Fetal Muscle Trunk	muscle
48	chr19:37710200-37710400	Weak transcription	Fetal Muscle Leg	muscle
49	chr19:37710200-37710400	Enhancers	Pancreas	Pancrea
50	chr19:37710200-37710400	Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links