Variant report

Variant	rs528153364
Chromosome Location	chr6:166720706-166720707
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166719852..166722547-chr6:166755922..166758056,2	K562	blood:

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886936	chr6:166714024-166731289	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3356004	chr6:166719787-166722335	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv823927	chr6:166719837-166722561	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3421182	chr6:166720387-166722935	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166718800-166722600	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:166719200-166722400	Active TSS	Brain Substantia Nigra	brain
3	chr6:166719400-166722400	Active TSS	Brain Cingulate Gyrus	brain
4	chr6:166719800-166720800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
5	chr6:166719800-166722400	Bivalent Enhancer	Fetal Brain Male	brain
6	chr6:166720000-166720800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:166720000-166720800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
8	chr6:166720000-166720800	Bivalent Enhancer	Fetal Lung	lung
9	chr6:166720200-166720800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr6:166720200-166720800	Bivalent Enhancer	Lung	lung
11	chr6:166720200-166721000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr6:166720200-166721000	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:166720200-166722000	Active TSS	GM12878-XiMat	blood
14	chr6:166720200-166722200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
15	chr6:166720200-166722400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:166720400-166720800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
17	chr6:166720400-166720800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:166720400-166720800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:166720400-166720800	Flanking Bivalent TSS/Enh	Right Ventricle	heart
20	chr6:166720400-166721000	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
21	chr6:166720400-166721000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:166720400-166721000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
23	chr6:166720400-166721000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr6:166720400-166721400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
25	chr6:166720400-166721600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr6:166720400-166721800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:166720400-166722200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr6:166720400-166722200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:166720400-166722200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:166720400-166722200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
31	chr6:166720400-166722400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
32	chr6:166720400-166722400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr6:166720400-166722400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
34	chr6:166720400-166722400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:166720400-166722600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
36	chr6:166720400-166722600	Active TSS	Brain Angular Gyrus	brain
37	chr6:166720600-166720800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:166720600-166720800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
39	chr6:166720600-166720800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
40	chr6:166720600-166720800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:166720600-166720800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:166720600-166720800	Enhancers	Primary hematopoietic stem cells	blood
43	chr6:166720600-166720800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr6:166720600-166720800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:166720600-166720800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
46	chr6:166720600-166720800	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:166720600-166720800	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr6:166720600-166720800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
49	chr6:166720600-166720800	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
50	chr6:166720600-166720800	Bivalent Enhancer	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links