Variant report

Variant	rs528271770
Chromosome Location	chr15:58765796-58765797
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58623181..58625459-chr15:58764481..58766715,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv457173	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv569600	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv904268	chr15:58763678-58803225	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv3410791	chr15:58765347-58765906	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58743800-58770400	Enhancers	Fetal Thymus	thymus
2	chr15:58755800-58765800	Weak transcription	Gastric	stomach
3	chr15:58759400-58768400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:58759400-58770400	Enhancers	Placenta	Placenta
5	chr15:58760400-58770200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:58760600-58767000	Weak transcription	Fetal Intestine Large	intestine
7	chr15:58761000-58767200	Weak transcription	Fetal Intestine Small	intestine
8	chr15:58761400-58766600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:58762000-58766200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:58762600-58766600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr15:58763000-58769400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:58763800-58766600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:58764000-58770200	Enhancers	Fetal Muscle Leg	muscle
14	chr15:58764000-58770200	Enhancers	Thymus	Thymus
15	chr15:58764400-58766200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:58764600-58766000	Enhancers	Left Ventricle	heart
17	chr15:58764600-58766400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:58764600-58767000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:58764600-58769600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:58764600-58769600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr15:58764600-58770200	Enhancers	Spleen	Spleen
22	chr15:58764800-58766000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr15:58764800-58766400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:58764800-58766400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:58764800-58766400	Enhancers	Hela-S3	cervix
26	chr15:58764800-58766400	Enhancers	NHDF-Ad	bronchial
27	chr15:58764800-58766600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:58764800-58766600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:58764800-58769600	Enhancers	HSMMtube	muscle
30	chr15:58765000-58765800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:58765000-58765800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr15:58765000-58765800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr15:58765000-58765800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:58765000-58765800	Enhancers	Liver	Liver
35	chr15:58765000-58766000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr15:58765000-58766000	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr15:58765000-58766000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:58765000-58766000	Enhancers	Brain Anterior Caudate	brain
39	chr15:58765000-58766000	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr15:58765000-58766000	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr15:58765000-58766200	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr15:58765000-58766200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr15:58765000-58766200	Enhancers	Esophagus	oesophagus
44	chr15:58765000-58766200	Flanking Active TSS	Dnd41	blood
45	chr15:58765000-58766200	Flanking Active TSS	GM12878-XiMat	blood
46	chr15:58765000-58766200	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr15:58765000-58766200	Flanking Active TSS	NHEK	skin
48	chr15:58765000-58766400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr15:58765000-58766400	Enhancers	Fetal Kidney	kidney
50	chr15:58765000-58766400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links