Variant report

Variant	rs528369836
Chromosome Location	chr18:45388503-45388504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:57916192..57918375-chr18:45387752..45390655,2	MCF-7	breast:
2	chr18:45388105..45390269-chr18:45393560..45395389,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057722	chr18:45343965-45401360	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1058673	chr18:45360012-45404492	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1059186	chr18:45360012-45407405	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1066394	chr18:45368587-45394386	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1060581	chr18:45368587-45397623	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1057525	chr18:45368587-45407405	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv1064282	chr18:45369857-45404768	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv1064797	chr18:45372027-45394386	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1063859	chr18:45372027-45404492	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1062318	chr18:45374239-45394780	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1055814	chr18:45374239-45395377	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1057298	chr18:45374239-45404428	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1062731	chr18:45374239-45404768	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1058128	chr18:45374658-45394780	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1065607	chr18:45374658-45404751	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1059619	chr18:45384301-45401360	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1066646	chr18:45384301-45406242	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1057028	chr18:45384301-45410482	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv1057181	chr18:45387616-45401360	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv1063791	chr18:45387616-45404428	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv1059120	chr18:45387616-45404768	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv1062089	chr18:45387616-45407754	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1064124	chr18:45387616-45410760	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv1059902	chr18:45387723-45401360	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv1057124	chr18:45387723-45404428	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
26	nsv1064655	chr18:45387723-45406182	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45345400-45400200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:45366200-45390000	Weak transcription	Colonic Mucosa	Colon
3	chr18:45366600-45408200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr18:45372200-45396000	Weak transcription	NHLF	lung
5	chr18:45382200-45420400	Weak transcription	Right Ventricle	heart
6	chr18:45382600-45389600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr18:45383000-45389600	Weak transcription	Fetal Heart	heart
8	chr18:45383000-45396600	Strong transcription	Hela-S3	cervix
9	chr18:45383600-45392400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:45384200-45398800	Weak transcription	Pancreas	Pancrea
11	chr18:45384200-45421200	Weak transcription	Gastric	stomach
12	chr18:45384200-45423000	Weak transcription	Lung	lung
13	chr18:45384400-45388600	Weak transcription	Psoas Muscle	Psoas
14	chr18:45384400-45389600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr18:45384400-45390200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr18:45384400-45390200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr18:45384400-45392200	Strong transcription	HSMM	muscle
18	chr18:45384400-45397600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr18:45384400-45397800	Weak transcription	Small Intestine	intestine
20	chr18:45384400-45400200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr18:45384400-45401200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr18:45384400-45410200	Weak transcription	Aorta	Aorta
23	chr18:45384400-45419600	Weak transcription	K562	blood
24	chr18:45384400-45423000	Weak transcription	Spleen	Spleen
25	chr18:45384600-45396600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr18:45384600-45399000	Weak transcription	Right Atrium	heart
27	chr18:45384800-45388800	Weak transcription	NH-A	brain
28	chr18:45384800-45389400	Weak transcription	HSMMtube	muscle
29	chr18:45384800-45392200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr18:45384800-45392600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr18:45384800-45396800	Weak transcription	Colon Smooth Muscle	Colon
32	chr18:45384800-45400200	Weak transcription	Brain Substantia Nigra	brain
33	chr18:45384800-45407000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr18:45384800-45418400	Weak transcription	Fetal Brain Male	brain
35	chr18:45385200-45389600	Weak transcription	Brain Anterior Caudate	brain
36	chr18:45385400-45388600	Weak transcription	HepG2	liver
37	chr18:45385400-45389000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr18:45385400-45389600	Weak transcription	Fetal Brain Female	brain
39	chr18:45385400-45389800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr18:45385400-45396800	Weak transcription	Stomach Mucosa	stomach
41	chr18:45385400-45400000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr18:45385600-45388600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr18:45385600-45388800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr18:45385600-45388800	Weak transcription	NHDF-Ad	bronchial
45	chr18:45385600-45389400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr18:45385600-45389600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr18:45385600-45389800	Weak transcription	Adipose Nuclei	Adipose
48	chr18:45385600-45400000	Weak transcription	Brain Hippocampus Middle	brain
49	chr18:45385600-45420800	Weak transcription	Brain Germinal Matrix	brain
50	chr18:45385800-45388600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links