Variant report

Variant	rs528449187
Chromosome Location	chr10:43892222-43892223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:43868700..43874062-chr10:43890607..43893448,6	MCF-7	breast:
2	chr10:43696369..43700743-chr10:43891529..43894634,3	K562	blood:
3	chr10:43868968..43875759-chr10:43890269..43893335,11	MCF-7	breast:
4	chr10:43697420..43700683-chr10:43890424..43894292,4	K562	blood:
5	chr10:43891174..43892847-chr10:44101479..44103589,2	K562	blood:
6	chr10:43891265..43892240-chr10:43903154..43903688,2	MCF-7	breast:
7	chr10:43889891..43893674-chr10:43930869..43934431,5	MCF-7	breast:
8	chr10:43887055..43906178-chr10:43946385..43955803,85	K562	blood:
9	chr1:152940729..152943667-chr10:43889848..43892528,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169813	Chromatin interaction
ENSG00000198915	Chromatin interaction
ENSG00000184148	Chromatin interaction
ENSG00000150201	Chromatin interaction
ENSG00000252532	Chromatin interaction
ENSG00000243660	Chromatin interaction
ENSG00000198298	Chromatin interaction
ENSG00000232004	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv825354	chr10:43883418-43949936	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv825355	chr10:43890579-43923802	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	esv3387789	chr10:43891371-43893919	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43890400-43893600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:43890600-43893000	Active TSS	Fetal Kidney	kidney
3	chr10:43890600-43893200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:43890600-43893200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:43890800-43893200	Active TSS	HSMMtube	muscle
6	chr10:43890800-43893400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:43890800-43893400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:43891000-43892800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:43891000-43893000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:43891000-43893000	Active TSS	Lung	lung
11	chr10:43891000-43893200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:43891000-43893200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:43891000-43893400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:43891000-43893400	Active TSS	Fetal Intestine Large	intestine
15	chr10:43891000-43893600	Active TSS	H9 Cell Line	embryonic stem cell
16	chr10:43891000-43893800	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr10:43891200-43892800	Active TSS	Liver	Liver
18	chr10:43891200-43893000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:43891200-43893000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:43891200-43893000	Active TSS	Fetal Lung	lung
21	chr10:43891200-43893000	Active TSS	Placenta Amnion	Placenta Amnion
22	chr10:43891200-43893200	Active TSS	HUES48 Cell Line	embryonic stem cell
23	chr10:43891200-43893200	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr10:43891200-43893200	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr10:43891200-43893200	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr10:43891200-43893400	Active TSS	Gastric	stomach
27	chr10:43891200-43893800	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr10:43891400-43892800	Active TSS	Pancreas	Pancrea
29	chr10:43891400-43892800	Active TSS	Spleen	Spleen
30	chr10:43891400-43893000	Active TSS	Esophagus	oesophagus
31	chr10:43891400-43893000	Active TSS	Ovary	ovary
32	chr10:43891400-43893000	Active TSS	Sigmoid Colon	Sigmoid Colon
33	chr10:43891400-43893200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:43891400-43893200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:43891400-43893200	Active TSS	Left Ventricle	heart
36	chr10:43891400-43893200	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr10:43891400-43893200	Active TSS	NHDF-Ad	bronchial
38	chr10:43891400-43893400	Active TSS	H1 Cell Line	embryonic stem cell
39	chr10:43891400-43893600	Active TSS	Fetal Brain Female	brain
40	chr10:43891400-43894000	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr10:43891600-43892800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:43891600-43892800	Active TSS	Aorta	Aorta
43	chr10:43891600-43893000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:43891600-43893000	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr10:43891600-43893000	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr10:43891600-43893000	Active TSS	Small Intestine	intestine
47	chr10:43891600-43893200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:43891600-43893200	Active TSS	Brain Angular Gyrus	brain
49	chr10:43891600-43893200	Active TSS	Colon Smooth Muscle	Colon
50	chr10:43891600-43893200	Active TSS	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links