Variant report

Variant	rs528471265
Chromosome Location	chr18:11856477-11856478
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr18:11849544-11856636	Hela-S3	cervix:	n/a	n/a
2	NR3C1	chr18:11856289-11856764	A549	lung:	n/a	chr18:11856585-11856592 chr18:11856556-11856563
3	POLR2A	chr18:11856194-11856654	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr18:11856282-11856560	A549	lung:	n/a	n/a
5	POLR2A	chr18:11848810-11859649	IMR90	lung:	n/a	n/a
6	POLR2A	chr18:11856248-11856612	ECC-1	luminal epithelium:	n/a	n/a
7	POLR2A	chr18:11854134-11856764	K562	blood:	n/a	n/a
8	MAZ	chr18:11856417-11856507	HepG2	liver:	n/a	n/a
9	ZKSCAN1	chr18:11856400-11856526	Hela-S3	cervix:	n/a	n/a
10	POLR2A	chr18:11855995-11856598	HepG2	liver:	n/a	n/a
11	POLR2A	chr18:11856228-11856621	A549	lung:	n/a	n/a
12	POLR2A	chr18:11849742-11860299	MCF10A-Er-Src	breast:	n/a	n/a
13	NR3C1	chr18:11856343-11856683	A549	lung:	n/a	chr18:11856585-11856592 chr18:11856556-11856563
14	FOXA1	chr18:11856343-11856762	A549	lung:	n/a	n/a
15	MXI1	chr18:11856053-11856577	HepG2	liver:	n/a	n/a
16	POLR2A	chr18:11856288-11856571	A549	lung:	n/a	n/a
17	POLR2A	chr18:11856399-11856542	K562	blood:	n/a	n/a
18	CREB1	chr18:11856323-11856533	A549	lung:	n/a	n/a
19	BHLHE40	chr18:11856366-11856583	K562	blood:	n/a	n/a
20	POLR2A	chr18:11856428-11856514	GM12878	blood:	n/a	n/a
21	POLR2A	chr18:11855957-11856665	A549	lung:	n/a	n/a
22	FOXA2	chr18:11856411-11856679	HepG2	liver:	n/a	n/a
23	ARID3A	chr18:11856004-11856621	HepG2	liver:	n/a	n/a
24	HEY1	chr18:11856409-11856599	HepG2	liver:	n/a	n/a
25	POLR2A	chr18:11856288-11856550	Hela-S3	cervix:	n/a	n/a
26	NR3C1	chr18:11856280-11856751	A549	lung:	n/a	chr18:11856585-11856592 chr18:11856556-11856563
27	NR3C1	chr18:11856241-11856804	A549	lung:	n/a	chr18:11856585-11856592 chr18:11856556-11856563
28	POLR2A	chr18:11849706-11860430	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11848600..11852886-chr18:11853629..11859008,5	K562	blood:

Variant related genes	Relation type
ENSG00000267165	TF binding region
GNAL	TF binding region
ENSG00000267165	Chromatin interaction
ENSG00000255112	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	esv3317298	chr18:11855697-11856801	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv3317299	chr18:11855697-11856801	Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11852400-11857200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:11852400-11860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr18:11852400-11880800	Weak transcription	Aorta	Aorta
4	chr18:11852600-11857000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr18:11853400-11857400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr18:11853400-11859200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr18:11853600-11856800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr18:11853600-11857000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:11853600-11857000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr18:11853600-11857000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr18:11853600-11857000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr18:11853600-11857000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr18:11853600-11857400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr18:11853600-11857400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr18:11853600-11857400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr18:11853600-11857400	Weak transcription	Fetal Muscle Leg	muscle
17	chr18:11853600-11857600	Weak transcription	Fetal Thymus	thymus
18	chr18:11853600-11859200	Weak transcription	Right Ventricle	heart
19	chr18:11853600-11859600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr18:11853600-11883800	Weak transcription	Ovary	ovary
21	chr18:11853800-11857000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr18:11853800-11857000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr18:11853800-11857000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr18:11853800-11857000	Weak transcription	Adipose Nuclei	Adipose
25	chr18:11853800-11857000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr18:11853800-11857200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr18:11853800-11857200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr18:11853800-11857200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr18:11853800-11857200	Weak transcription	Brain Anterior Caudate	brain
30	chr18:11853800-11857200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr18:11853800-11857200	Weak transcription	Fetal Kidney	kidney
32	chr18:11853800-11857200	Weak transcription	K562	blood
33	chr18:11853800-11857400	Weak transcription	Placenta	Placenta
34	chr18:11853800-11857400	Weak transcription	Right Atrium	heart
35	chr18:11853800-11861000	Weak transcription	Fetal Lung	lung
36	chr18:11853800-11884200	Weak transcription	Brain Substantia Nigra	brain
37	chr18:11854000-11856600	Genic enhancers	Duodenum Mucosa	Duodenum
38	chr18:11854000-11857000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr18:11854000-11857200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr18:11854000-11857200	Weak transcription	Left Ventricle	heart
41	chr18:11854000-11861600	Weak transcription	Spleen	Spleen
42	chr18:11854000-11875000	Weak transcription	Brain Hippocampus Middle	brain
43	chr18:11854000-11884200	Weak transcription	Brain Angular Gyrus	brain
44	chr18:11854200-11857000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr18:11854200-11857400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr18:11854200-11868200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr18:11854400-11868400	Weak transcription	Primary B cells from cord blood	blood
48	chr18:11854600-11856800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr18:11854800-11889200	Weak transcription	Fetal Brain Male	brain
50	chr18:11855000-11856800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links