Variant report

Variant	rs529165203
Chromosome Location	chr12:31080278-31080279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949148	chr12:30800040-31131712	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1052957	chr12:30951520-31191197	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv541439	chr12:30951520-31191197	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1052869	chr12:30951520-31399162	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv2422447	chr12:30954811-31449815	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv832362	chr12:30957786-31124983	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1053711	chr12:30959987-31156297	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv558030	chr12:30969675-31266287	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1041877	chr12:31009451-31809254	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
10	nsv541440	chr12:31009451-31809254	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
11	nsv1051648	chr12:31069125-31103671	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv2422366	chr12:31071959-31276836	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv658	chr12:31072400-31108649	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3431172	chr12:31078685-31080783	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
15	nsv1047628	chr12:31080091-31149639	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv541441	chr12:31080091-31399162	Strong transcription Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31078800-31080600	Enhancers	Spleen	Spleen
2	chr12:31079000-31080400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr12:31079000-31080800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
4	chr12:31079200-31080400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:31079200-31080400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr12:31079200-31080600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr12:31079200-31081000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
8	chr12:31079200-31081600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
9	chr12:31079400-31080600	Bivalent/Poised TSS	Colonic Mucosa	Colon
10	chr12:31079400-31084200	Enhancers	Fetal Lung	lung
11	chr12:31079800-31080400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:31079800-31080400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr12:31079800-31080400	Flanking Active TSS	Fetal Brain Male	brain
14	chr12:31079800-31080600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:31079800-31081000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:31079800-31081000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr12:31080000-31080400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
18	chr12:31080000-31080400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
19	chr12:31080000-31080400	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:31080000-31080400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
21	chr12:31080000-31080400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
22	chr12:31080000-31080400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
23	chr12:31080000-31080400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:31080000-31080400	Bivalent Enhancer	Adipose Nuclei	Adipose
25	chr12:31080000-31080400	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr12:31080000-31080400	Flanking Active TSS	Fetal Brain Female	brain
27	chr12:31080000-31080400	Flanking Active TSS	Fetal Heart	heart
28	chr12:31080000-31080400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr12:31080000-31080400	Enhancers	Lung	lung
30	chr12:31080000-31080400	Enhancers	HSMM	muscle
31	chr12:31080000-31080800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr12:31080000-31080800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr12:31080000-31081000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:31080000-31081200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr12:31080000-31081600	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr12:31080000-31083200	Weak transcription	Right Atrium	heart
37	chr12:31080000-31083200	Weak transcription	Right Ventricle	heart
38	chr12:31080200-31080400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr12:31080200-31080400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr12:31080200-31080400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr12:31080200-31080400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr12:31080200-31080400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
43	chr12:31080200-31080400	Bivalent Enhancer	Brain Anterior Caudate	brain
44	chr12:31080200-31080400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
45	chr12:31080200-31080400	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr12:31080200-31080400	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr12:31080200-31080400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
48	chr12:31080200-31080400	Bivalent Enhancer	NHDF-Ad	bronchial
49	chr12:31080200-31080600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
50	chr12:31080200-31080600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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