Variant report

Variant	rs529205646
Chromosome Location	chr19:44853262-44853263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44847055..44849987-chr19:44852679..44854366,2	MCF-7	breast:
2	chr19:44852656..44854693-chr19:44860503..44863096,2	K562	blood:
3	chr19:44846057..44848981-chr19:44852585..44854533,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000062370	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912110	chr19:44840789-44902190	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv963093	chr19:44850276-44876742	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv912111	chr19:44852134-44902190	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv579855	chr19:44852134-44930348	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv515911	chr19:44852134-44935019	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44840800-44860000	Weak transcription	NHDF-Ad	bronchial
3	chr19:44844200-44859600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr19:44844200-44859800	Weak transcription	Osteobl	bone
5	chr19:44845000-44860000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr19:44845200-44860000	Weak transcription	HSMM	muscle
7	chr19:44845400-44859800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr19:44847400-44855200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr19:44847800-44855400	Weak transcription	Right Ventricle	heart
10	chr19:44848200-44853400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr19:44848200-44854800	Weak transcription	Fetal Brain Male	brain
12	chr19:44849600-44859800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr19:44850000-44853400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr19:44850400-44860000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr19:44850400-44860200	Weak transcription	Left Ventricle	heart
16	chr19:44851400-44860400	Weak transcription	Aorta	Aorta
17	chr19:44852000-44853600	ZNF genes & repeats	A549	lung
18	chr19:44852400-44853600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr19:44852400-44855400	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr19:44852600-44853400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr19:44852600-44859800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr19:44853000-44854000	ZNF genes & repeats	Fetal Lung	lung
23	chr19:44853200-44853400	ZNF genes & repeats	Ovary	ovary
24	chr19:44853200-44853800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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