Variant report

Variant	rs529776603
Chromosome Location	chr3:17731870-17731871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:17726957..17730197-chr3:17731343..17734171,3	K562	blood:
2	chr3:17726443..17728457-chr3:17731343..17734227,2	K562	blood:
3	chr3:17729939..17731943-chr3:17732995..17734878,2	MCF-7	breast:
4	chr3:17472510..17474069-chr3:17729758..17732549,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2583047	chr3:17730772-17732367	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv6157	chr3:17731444-17732222	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2211188	chr3:17731504-17732210	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3461532	chr3:17731577-17732111	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3507937	chr3:17731600-17732119	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3507936	chr3:17731607-17732102	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv4814	chr3:17731609-17732064	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3507938	chr3:17731616-17732045	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3461531	chr3:17731620-17732205	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3507935	chr3:17731629-17732062	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3461529	chr3:17731636-17732036	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3507934	chr3:17731645-17732052	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3461533	chr3:17731683-17732026	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv3507939	chr3:17731683-17732026	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17707000-17734800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr3:17709200-17732000	Weak transcription	Psoas Muscle	Psoas
3	chr3:17711400-17755000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:17712600-17732600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:17720000-17747400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:17720200-17734200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:17720600-17734400	Weak transcription	Dnd41	blood
8	chr3:17723400-17735200	Weak transcription	Gastric	stomach
9	chr3:17723600-17734400	Weak transcription	Primary B cells from cord blood	blood
10	chr3:17723600-17736000	Weak transcription	Pancreas	Pancrea
11	chr3:17723600-17736800	Weak transcription	Ovary	ovary
12	chr3:17724600-17734800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:17725800-17734400	Weak transcription	A549	lung
14	chr3:17726600-17734200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:17726800-17742200	Weak transcription	Stomach Mucosa	stomach
16	chr3:17729400-17734200	Weak transcription	K562	blood
17	chr3:17730400-17734400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:17730400-17734600	Weak transcription	Spleen	Spleen
19	chr3:17731600-17734200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:17731600-17755600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:17731800-17734400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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