Variant report

Variant	rs530409696
Chromosome Location	chr15:58764698-58764699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58623181..58625459-chr15:58764481..58766715,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv457173	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv569600	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv904268	chr15:58763678-58803225	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58743800-58770400	Enhancers	Fetal Thymus	thymus
2	chr15:58752800-58765000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:58755400-58765000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr15:58755400-58765000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:58755800-58765800	Weak transcription	Gastric	stomach
6	chr15:58759400-58768400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:58759400-58770400	Enhancers	Placenta	Placenta
8	chr15:58759600-58765200	Weak transcription	Fetal Lung	lung
9	chr15:58759600-58765200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:58759800-58765000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:58759800-58765000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:58760400-58770200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:58760600-58765000	Weak transcription	K562	blood
14	chr15:58760600-58767000	Weak transcription	Fetal Intestine Large	intestine
15	chr15:58760800-58765000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:58760800-58765000	Weak transcription	Small Intestine	intestine
17	chr15:58760800-58765200	Enhancers	HMEC	breast
18	chr15:58761000-58767200	Weak transcription	Fetal Intestine Small	intestine
19	chr15:58761400-58766600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:58761800-58765000	Enhancers	Dnd41	blood
21	chr15:58762000-58765000	Weak transcription	Liver	Liver
22	chr15:58762000-58765000	Weak transcription	Pancreas	Pancrea
23	chr15:58762000-58765000	Weak transcription	NHLF	lung
24	chr15:58762000-58765200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:58762000-58766200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:58762200-58765000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:58762200-58765000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:58762200-58765000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:58762400-58765000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:58762400-58765000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:58762400-58765000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:58762400-58765000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:58762400-58765000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:58762400-58765000	Weak transcription	Fetal Kidney	kidney
35	chr15:58762400-58765000	Weak transcription	Right Atrium	heart
36	chr15:58762400-58765200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr15:58762400-58765200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:58762400-58765200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:58762600-58764800	Weak transcription	HUVEC	blood vessel
40	chr15:58762600-58765000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:58762600-58765000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr15:58762600-58766600	Enhancers	Placenta Amnion	Placenta Amnion
43	chr15:58762800-58765200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr15:58763000-58765000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:58763000-58765000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr15:58763000-58765000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr15:58763000-58765000	Weak transcription	Osteobl	bone
48	chr15:58763000-58765200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:58763000-58765200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:58763000-58769400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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