Variant report

Variant	rs530515981
Chromosome Location	chr10:4307246-4307247
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3825342..3830573-chr10:4304925..4310190,7	MCF-7	breast:
2	chr10:3823986..3829739-chr10:4306109..4310504,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1043787	chr10:4286880-4307322	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1036103	chr10:4286880-4311792	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3458618	chr10:4293384-4311663	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3458507	chr10:4293418-4311634	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3458730	chr10:4293489-4311565	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1037897	chr10:4294071-4311585	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv33732	chr10:4302983-4318917	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv437653	chr10:4304810-4314845	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4296800-4308800	Weak transcription	Psoas Muscle	Psoas
2	chr10:4301600-4316000	Weak transcription	Gastric	stomach
3	chr10:4303200-4308800	Weak transcription	Fetal Brain Male	brain
4	chr10:4303200-4308800	Weak transcription	HMEC	breast
5	chr10:4303200-4309000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:4303200-4312200	Weak transcription	HUVEC	blood vessel
7	chr10:4303400-4308000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:4303400-4308800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:4303400-4308800	Weak transcription	Fetal Heart	heart
10	chr10:4303400-4312200	Weak transcription	NHEK	skin
11	chr10:4304000-4309000	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:4305000-4309000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:4305600-4309800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:4305800-4307400	Enhancers	Placenta	Placenta
15	chr10:4306200-4308000	Weak transcription	Esophagus	oesophagus
16	chr10:4306200-4308200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:4306200-4308200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:4306200-4308200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:4306200-4308200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:4306200-4308200	Weak transcription	Small Intestine	intestine
21	chr10:4306200-4308600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:4306200-4308600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:4306200-4308600	Weak transcription	NHDF-Ad	bronchial
24	chr10:4306200-4308800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:4306200-4313400	Weak transcription	Aorta	Aorta
26	chr10:4306400-4308000	Weak transcription	Fetal Intestine Small	intestine
27	chr10:4306400-4308000	Weak transcription	Fetal Lung	lung
28	chr10:4306400-4308200	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:4306400-4308400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:4306400-4308800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:4306400-4308800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:4306400-4308800	Weak transcription	Fetal Stomach	stomach
33	chr10:4306400-4309000	Weak transcription	NHLF	lung
34	chr10:4306400-4312400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:4306600-4309000	Weak transcription	Colonic Mucosa	Colon
36	chr10:4306800-4308200	Weak transcription	Adipose Nuclei	Adipose
37	chr10:4306800-4308200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr10:4306800-4308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:4306800-4309000	Weak transcription	Liver	Liver
40	chr10:4306800-4309000	Weak transcription	Lung	lung
41	chr10:4306800-4309000	Weak transcription	Ovary	ovary
42	chr10:4306800-4309000	Weak transcription	Right Atrium	heart
43	chr10:4306800-4312400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:4307000-4309000	Weak transcription	Right Ventricle	heart
45	chr10:4307000-4309400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:4307000-4311600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:4307200-4307600	Weak transcription	Pancreas	Pancrea
48	chr10:4307200-4308600	Weak transcription	Spleen	Spleen
49	chr10:4307200-4309000	Weak transcription	Left Ventricle	heart
50	chr10:4307200-4312200	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links