Variant report

Variant	rs530897513
Chromosome Location	chr9:72929884-72929885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72872453..72875557-chr9:72928481..72931289,3	K562	blood:

Variant related genes	Relation type
ENSG00000268364	Chromatin interaction
ENSG00000198887	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2484591	chr9:72929015-72930616	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
3	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
5	chr9:72877000-72939800	Weak transcription	Gastric	stomach
6	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:72878600-72937600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr9:72880000-72939400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr9:72900600-72939400	Weak transcription	Small Intestine	intestine
12	chr9:72900600-72942600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:72903000-72930400	Weak transcription	Brain Angular Gyrus	brain
14	chr9:72907200-72942600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:72908800-72942800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr9:72911400-72930000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:72912000-72943000	Strong transcription	HSMM	muscle
18	chr9:72912400-72930600	Strong transcription	Fetal Intestine Large	intestine
19	chr9:72912600-72947800	Strong transcription	Placenta	Placenta
20	chr9:72913800-72957800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:72915400-72935200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:72917000-72935200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:72917400-72933800	Weak transcription	Brain Substantia Nigra	brain
24	chr9:72917600-72933800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:72918200-72942800	Weak transcription	Aorta	Aorta
26	chr9:72919400-72941600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:72919600-72940000	Weak transcription	Pancreas	Pancrea
28	chr9:72919800-72933000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr9:72920000-72931600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:72920200-72939600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr9:72920400-72941000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:72920600-72930000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:72921000-72941400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr9:72921200-72937800	Weak transcription	K562	blood
35	chr9:72921600-72934400	Weak transcription	HMEC	breast
36	chr9:72921600-72935800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr9:72922000-72938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr9:72923000-72938600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr9:72923000-72939200	Weak transcription	Lung	lung
40	chr9:72923200-72933400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr9:72923200-72938000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:72923200-72939400	Weak transcription	Colonic Mucosa	Colon
43	chr9:72924000-72931000	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr9:72924000-72944400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr9:72924200-72941000	Strong transcription	Dnd41	blood
46	chr9:72924200-72941200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr9:72924200-72943200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:72924400-72931200	Strong transcription	Adipose Nuclei	Adipose
49	chr9:72924800-72930200	Weak transcription	NHEK	skin
50	chr9:72924800-72933400	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links