Variant report

Variant	rs531760840
Chromosome Location	chr10:43920754-43920755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43914769..43917445-chr10:43920064..43922045,2	MCF-7	breast:
2	chr10:43919040..43921550-chr10:43937785..43940641,2	K562	blood:
3	chr10:43919994..43922298-chr10:43925539..43927816,2	K562	blood:
4	chr10:43901381..43904812-chr10:43920194..43925203,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230555	Chromatin interaction
ENSG00000169813	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv825354	chr10:43883418-43949936	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv825355	chr10:43890579-43923802	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv825356	chr10:43893080-43946515	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
8	esv3448813	chr10:43919995-43950867	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43916800-43921200	Weak transcription	Primary T cells from cord blood	blood
2	chr10:43916800-43922400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:43916800-43931400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:43916800-43931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:43916800-43931600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:43917000-43931600	Weak transcription	Fetal Brain Female	brain
7	chr10:43917200-43921200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr10:43917200-43921200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:43917200-43921200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:43917200-43921200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:43917200-43921400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:43917200-43921400	Weak transcription	GM12878-XiMat	blood
13	chr10:43917200-43921600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:43917200-43921600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:43917200-43922200	Weak transcription	Fetal Thymus	thymus
16	chr10:43917200-43922400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:43917200-43930800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:43917200-43930800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:43917200-43931600	Weak transcription	Brain Anterior Caudate	brain
20	chr10:43917400-43921200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:43917400-43921200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:43917400-43921200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:43917400-43921200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:43917400-43921600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr10:43917400-43922400	Weak transcription	Primary B cells from cord blood	blood
26	chr10:43917400-43930400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:43917400-43930800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:43917400-43930800	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:43917400-43930800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:43917400-43930800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:43917400-43931600	Weak transcription	Brain Angular Gyrus	brain
32	chr10:43917600-43921200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:43917600-43922000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:43917600-43922400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:43917600-43930800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:43917600-43930800	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:43917600-43931600	Weak transcription	Right Ventricle	heart
38	chr10:43917800-43921400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:43918000-43928000	Weak transcription	Fetal Intestine Small	intestine
40	chr10:43919800-43926400	Weak transcription	K562	blood
41	chr10:43920000-43930400	Weak transcription	Liver	Liver
42	chr10:43920000-43930400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:43920200-43923600	Weak transcription	HepG2	liver
44	chr10:43920200-43925200	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:43920200-43931600	Weak transcription	Fetal Lung	lung

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