Variant report

Variant	rs532085788
Chromosome Location	chr6:114666321-114666322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:114663648-114666435	SK-N-SH	brain:	n/a	chr6:114664014-114664028

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114662119..114667220-chr6:114669334..114673077,6	MCF-7	breast:

Variant related genes	Relation type
HS3ST5	TF binding region
ENSG00000218089	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3692910	chr6:114597419-115480580	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv528128	chr6:114597657-115471129	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv818451	chr6:114597657-115471129	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv428494	chr6:114666307-114774841	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv2758074	chr6:114666308-115526957	Enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114665000-114666400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:114665200-114666600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:114665200-114667600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:114665400-114667200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:114665400-114667800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:114665600-114666600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr6:114665600-114666600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:114665600-114667000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:114665800-114666600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:114665800-114666800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:114665800-114667000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:114665800-114667000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:114666000-114666400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:114666000-114666400	Enhancers	Brain Anterior Caudate	brain
15	chr6:114666200-114666400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:114666200-114666400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:114666200-114666400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:114666200-114666400	Enhancers	Brain Hippocampus Middle	brain
19	chr6:114666200-114666400	Enhancers	Esophagus	oesophagus
20	chr6:114666200-114666600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:114666200-114666600	Enhancers	Fetal Brain Male	brain
22	chr6:114666200-114666800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:114666200-114667200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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