Variant report

Variant	rs532239810
Chromosome Location	chr6:35228058-35228059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35227214..35229292-chr6:35260435..35263392,2	K562	blood:
2	chr6:34202035..34205684-chr6:35227191..35229008,3	K562	blood:
3	chr5:40754825..40755698-chr6:35227582..35228201,2	Hela-S3	cervix:
4	chr6:35227857..35229725-chr6:35245132..35247985,2	K562	blood:
5	chr6:35227633..35229883-chr6:35250389..35252972,3	K562	blood:
6	chr11:62608457..62610625-chr6:35227226..35229917,3	K562	blood:
7	chr6:35227208..35228940-chr6:35464081..35465836,2	K562	blood:
8	chr6:35226889..35228758-chr6:35259523..35261436,2	MCF-7	breast:
9	chr6:35226066..35229330-chr6:35434346..35438215,4	K562	blood:
10	chr6:34856224..34858095-chr6:35226235..35229197,2	MCF-7	breast:
11	chr6:34854986..34858344-chr6:35226281..35229493,3	K562	blood:
12	chr6:35226330..35228825-chr6:35434969..35437843,3	MCF-7	breast:
13	chr16:72127858..72128539-chr6:35227141..35228082,2	Hela-S3	cervix:
14	chr6:35227094..35229802-chr6:35433183..35436613,4	K562	blood:
15	chr19:2269411..2270247-chr6:35227292..35228062,2	Hela-S3	cervix:
16	chr6:35227789..35229882-chr6:35245132..35248269,3	K562	blood:
17	chr6:35227851..35229511-chr6:35235858..35238683,2	MCF-7	breast:
18	chr2:233561381..233562276-chr6:35227526..35228227,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000217004	Chromatin interaction
ENSG00000167476	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000140830	Chromatin interaction
ENSG00000064995	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000104904	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000204120	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000007866	Chromatin interaction
ENSG00000064999	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2750621	chr6:35227168-35228219	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35226000-35228200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:35226000-35228200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:35226000-35228200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:35226000-35228200	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:35226000-35228200	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:35226000-35228200	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr6:35226000-35228200	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:35226000-35228200	Active TSS	Ovary	ovary
9	chr6:35226000-35228200	Active TSS	HSMM	muscle
10	chr6:35226000-35228200	Active TSS	NHLF	lung
11	chr6:35226000-35228400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:35226200-35228200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:35226200-35228200	Active TSS	Aorta	Aorta
14	chr6:35226200-35228400	Active TSS	Left Ventricle	heart
15	chr6:35226400-35228200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:35226400-35228200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:35226400-35228200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:35226400-35228200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:35226400-35228200	Active TSS	A549	lung
20	chr6:35226400-35228200	Active TSS	GM12878-XiMat	blood
21	chr6:35226400-35228200	Active TSS	NHDF-Ad	bronchial
22	chr6:35226400-35228400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr6:35226400-35228400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:35226400-35228400	Active TSS	Psoas Muscle	Psoas
25	chr6:35226400-35228600	Active TSS	H9 Cell Line	embryonic stem cell
26	chr6:35226400-35228600	Active TSS	HSMMtube	muscle
27	chr6:35226600-35228200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:35226600-35228200	Active TSS	Gastric	stomach
29	chr6:35226600-35228200	Active TSS	Lung	lung
30	chr6:35226600-35228400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:35226600-35228400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:35226600-35228400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr6:35226600-35228400	Active TSS	Brain Germinal Matrix	brain
34	chr6:35226600-35228400	Active TSS	Right Ventricle	heart
35	chr6:35226600-35228800	Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr6:35226800-35228200	Active TSS	Fetal Intestine Large	intestine
37	chr6:35227000-35228400	Active TSS	Colonic Mucosa	Colon
38	chr6:35227800-35228200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr6:35227800-35228200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:35227800-35228200	Flanking Active TSS	Fetal Muscle Trunk	muscle
41	chr6:35227800-35228200	Flanking Active TSS	Thymus	Thymus
42	chr6:35227800-35228400	Flanking Active TSS	Primary B cells from peripheral blood	blood
43	chr6:35227800-35228400	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr6:35227800-35228400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr6:35227800-35228400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:35227800-35228400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr6:35227800-35228400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:35227800-35228400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr6:35227800-35228400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:35227800-35228400	Flanking Active TSS	Fetal Muscle Leg	muscle

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