Variant report

Variant	rs532332888
Chromosome Location	chr6:149745121-149745122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149379361..149382289-chr6:149745014..149748004,4	MCF-7	breast:
2	chr6:149740980..149743677-chr6:149744800..149747765,2	K562	blood:
3	chr6:149744819..149747181-chr6:149748180..149751163,2	MCF-7	breast:
4	chr6:149352125..149354322-chr6:149744702..149746498,2	MCF-7	breast:
5	chr6:149348466..149350718-chr6:149745093..149747617,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv517606	chr6:149744632-149755695	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149721800-149745200	Weak transcription	Pancreas	Pancrea
3	chr6:149731600-149745200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:149731600-149745200	Weak transcription	Left Ventricle	heart
5	chr6:149731600-149745200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:149731800-149745200	Weak transcription	Fetal Brain Female	brain
7	chr6:149732400-149745200	Weak transcription	Brain Germinal Matrix	brain
8	chr6:149732600-149745400	Weak transcription	Dnd41	blood
9	chr6:149744000-149745600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:149744000-149746800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:149744200-149745600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:149744400-149745200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:149744400-149745200	Active TSS	Brain Anterior Caudate	brain
14	chr6:149744400-149745200	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr6:149744400-149745200	Weak transcription	Placenta	Placenta
16	chr6:149744400-149745200	Weak transcription	Lung	lung
17	chr6:149744400-149745400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:149744400-149745400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:149744400-149745400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:149744400-149745400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:149744400-149745400	Enhancers	HSMMtube	muscle
22	chr6:149744400-149745400	Flanking Active TSS	Osteobl	bone
23	chr6:149744400-149745600	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:149744400-149745600	Enhancers	Ovary	ovary
25	chr6:149744600-149745200	Active TSS	Brain Angular Gyrus	brain
26	chr6:149744600-149745200	Active TSS	Brain Cingulate Gyrus	brain
27	chr6:149744600-149745200	Active TSS	Brain Hippocampus Middle	brain
28	chr6:149744600-149745200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:149744600-149745200	Enhancers	Fetal Intestine Small	intestine
30	chr6:149744600-149745200	Flanking Active TSS	NHDF-Ad	bronchial
31	chr6:149744600-149745400	Active TSS	Aorta	Aorta
32	chr6:149744600-149745400	Active TSS	Stomach Smooth Muscle	stomach
33	chr6:149744600-149745600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:149744600-149745600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:149744600-149745600	Enhancers	HSMM	muscle
36	chr6:149744600-149746400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr6:149744800-149745200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:149744800-149745200	Active TSS	Adipose Nuclei	Adipose
39	chr6:149744800-149745200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:149744800-149745200	Active TSS	Fetal Lung	lung
41	chr6:149744800-149745200	Enhancers	NH-A	brain
42	chr6:149744800-149745400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr6:149744800-149745400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:149744800-149745400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr6:149744800-149745400	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr6:149744800-149745600	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr6:149744800-149745600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:149744800-149745600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr6:149744800-149745600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr6:149744800-149745600	Enhancers	Fetal Muscle Leg	muscle

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