Variant report

Variant	rs532638292
Chromosome Location	chr5:177209323-177209324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:177209285-177209335	HRPEpiC	eye:	n/a
2	chr5:177209285-177209335	PFSK-1	brain:	n/a
3	chr5:177209285-177209335	AG09309	skin:	n/a
4	chr5:177209285-177209335	HRCEpiC	kidney:	n/a
5	chr5:177209285-177209335	HCM	heart:	n/a
6	chr5:177209285-177209335	BE2_C	brain:	n/a
7	chr5:177209285-177209335	SK-N-SH	brain:	n/a
8	chr5:177209285-177209335	HPAEpiC	pulmonary alveolar:	n/a
9	chr5:177209285-177209335	HAEpiC	amniotic membrane:	n/a
10	chr5:177209285-177209335	AG09319	gingival:	n/a
11	chr5:177209285-177209335	K562	blood:	n/a
12	chr5:177209285-177209335	Caco-2	colon:	n/a
13	chr5:177209285-177209335	GM12892	blood:	n/a
14	chr5:177209285-177209335	NH-A	brain:	n/a
15	chr5:177209285-177209335	LNCaP	prostate:	n/a
16	chr5:177209285-177209335	AG10803	skin:	n/a
17	chr5:177209285-177209335	SKMC	muscle:	n/a
18	chr5:177209285-177209335	Jurkat	blood:	n/a
19	chr5:177209285-177209335	AG04450	lung:	fetal
20	chr5:177209285-177209335	CMK	blood:	n/a
21	chr5:177209285-177209335	SK-N-MC	brain:	n/a
22	chr5:177209285-177209335	PANC-1	pancreas:	n/a
23	chr5:177209285-177209335	NB4	blood:	n/a
24	chr5:177209285-177209335	NHBE	bronchial:	n/a
25	chr5:177209285-177209335	IMR90	lung:	fetal
26	chr5:177209285-177209335	HMEC	breast:	n/a
27	chr5:177209285-177209335	BJ	skin:	n/a
28	chr5:177209285-177209335	T-47D	breast:	n/a
29	chr5:177209285-177209335	NHDF-neo	bronchial:	n/a
30	chr5:177209285-177209335	HUVEC	blood vessel:	n/a
31	chr5:177209285-177209335	HEEpiC	esophagus:	n/a
32	chr5:177209285-177209335	SK-N-SH_RA	brain:	n/a
33	chr5:177209285-177209335	A549	lung:	n/a
34	chr5:177209285-177209335	AG04449	skin:	fetal
35	chr5:177209285-177209335	HL-60	blood:	n/a
36	chr5:177209285-177209335	HIPEpiC	eye:	n/a
37	chr5:177209285-177209335	MCF10A-Er-Src	breast:	n/a
38	chr5:177209285-177209335	RPTEC	kidney:	n/a
39	chr5:177209285-177209335	Hela-S3	cervix:	n/a
40	chr5:177209285-177209335	GM06990	blood:	n/a
41	chr5:177209285-177209335	MCF-7	breast:	n/a
42	chr5:177209285-177209335	H1-hESC	embryonic stem cell:	embryo
43	chr5:177209285-177209335	NT2-D1	testis:	n/a
44	chr5:177209285-177209335	HNPCEpiC	eye:	n/a
45	chr5:177209285-177209335	PrEC	prostate:	n/a
46	chr5:177209285-177209335	HRE	kidney:	n/a
47	chr5:177209285-177209335	HCPEpiC	choroid plexus:	n/a
48	chr5:177209285-177209335	HCF	heart:	n/a
49	chr5:177209285-177209335	Hepatocyte	liver:	n/a
50	chr5:177209285-177209335	U87	brain:	n/a

No data

Variant related genes	Relation type
FAM153A	CpG island

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv519647	chr5:177120697-177260129	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2763927	chr5:177132443-177260330	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1033211	chr5:177133646-177383386	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv964982	chr5:177171341-177210315	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv5150	chr5:177180399-177225918	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv10511	chr5:177188642-177227371	Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2762571	chr5:177197955-177260330	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv968350	chr5:177206188-177210315	Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3413003	chr5:177207696-177209994	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177209000-177209800	Active TSS	Primary T helper cells PMA-I stimulated	--

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