Variant report

Variant	rs532809277
Chromosome Location	chr9:104219283-104219284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv614962	chr9:104204614-104240708	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3404236	chr9:104217731-104222129	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3410243	chr9:104218581-104221479	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv3403455	chr9:104218656-104221504	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3492403	chr9:104219006-104221479	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv2651786	chr9:104219161-104220762	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3482587	chr9:104219276-104220783	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104212000-104221200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:104212000-104241400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:104216800-104219600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:104216800-104220400	Weak transcription	Fetal Intestine Large	intestine
5	chr9:104217000-104227600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:104218000-104219400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:104218200-104222000	Enhancers	HepG2	liver
8	chr9:104218200-104223000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:104218600-104220000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr9:104218600-104228800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:104218800-104219600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:104218800-104219600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:104218800-104223400	Weak transcription	NH-A	brain
14	chr9:104219000-104219400	Weak transcription	Adipose Nuclei	Adipose
15	chr9:104219000-104219600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:104219000-104219600	Enhancers	Liver	Liver
17	chr9:104219000-104220000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:104219000-104221800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:104219200-104219800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr9:104219200-104220600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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