Variant report

Variant	rs533505525
Chromosome Location	chr2:180630634-180630635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180629400-180631200	Weak transcription	Liver	Liver
2	chr2:180629600-180633200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:180630000-180630800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr2:180630000-180631200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:180630000-180631200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:180630000-180631800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:180630000-180632200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:180630000-180632200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:180630200-180631000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:180630200-180631200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:180630200-180632200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr2:180630400-180631000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:180630600-180631600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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