Variant report

Variant	rs533585413
Chromosome Location	chr20:24562911-24562912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv990034	chr20:24562298-24563174	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24549800-24565800	Weak transcription	Thymus	Thymus
3	chr20:24553800-24564800	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24554000-24564800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr20:24555800-24564000	Weak transcription	Brain Hippocampus Middle	brain
6	chr20:24559800-24563200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr20:24559800-24564000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr20:24560800-24564800	Weak transcription	Brain Angular Gyrus	brain
9	chr20:24560800-24565000	Weak transcription	Fetal Muscle Leg	muscle
10	chr20:24561000-24565000	Weak transcription	Brain Substantia Nigra	brain
11	chr20:24561800-24565000	Weak transcription	Brain Germinal Matrix	brain
12	chr20:24562200-24563000	Enhancers	Right Ventricle	heart
13	chr20:24562400-24563000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr20:24562400-24567400	Weak transcription	Fetal Brain Female	brain
15	chr20:24562600-24565000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr20:24562600-24570000	Weak transcription	Spleen	Spleen
17	chr20:24562800-24563200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr20:24562800-24563400	Enhancers	Fetal Brain Male	brain
19	chr20:24562800-24564800	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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