Variant report

Variant	rs533846941
Chromosome Location	chr11:49003397-49003398
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:49003361-49003411	AG04450	lung:	fetal
2	chr11:49003361-49003411	PrEC	prostate:	n/a
3	chr11:49003361-49003411	HCPEpiC	choroid plexus:	n/a
4	chr11:49003361-49003411	Hepatocyte	liver:	n/a
5	chr11:49003361-49003411	GM12892	blood:	n/a
6	chr11:49003361-49003411	H1-hESC	embryonic stem cell:	embryo
7	chr11:49003361-49003411	AG09309	skin:	n/a
8	chr11:49003361-49003411	PFSK-1	brain:	n/a
9	chr11:49003361-49003411	HRCEpiC	kidney:	n/a
10	chr11:49003361-49003411	AG04449	skin:	fetal
11	chr11:49003361-49003411	LNCaP	prostate:	n/a
12	chr11:49003361-49003411	HL-60	blood:	n/a
13	chr11:49003361-49003411	HAEpiC	amniotic membrane:	n/a
14	chr11:49003361-49003411	U87	brain:	n/a
15	chr11:49003361-49003411	HEK293	kidney:	embryo
16	chr11:49003361-49003411	SK-N-SH_RA	brain:	n/a
17	chr11:49003361-49003411	HIPEpiC	eye:	n/a
18	chr11:49003361-49003411	NT2-D1	testis:	n/a
19	chr11:49003361-49003411	A549	lung:	n/a
20	chr11:49003361-49003411	HCM	heart:	n/a
21	chr11:49003361-49003411	MCF-7	breast:	n/a
22	chr11:49003361-49003411	PANC-1	pancreas:	n/a
23	chr11:49003361-49003411	IMR90	lung:	fetal
24	chr11:49003361-49003411	AoSMC	blood vessel:	n/a
25	chr11:49003361-49003411	ProgFib	skin:	n/a
26	chr11:49003361-49003411	T-47D	breast:	n/a
27	chr11:49003361-49003411	Hela-S3	cervix:	n/a
28	chr11:49003361-49003411	GM06990	blood:	n/a
29	chr11:49003361-49003411	AG10803	skin:	n/a
30	chr11:49003361-49003411	GM12878	blood:	n/a
31	chr11:49003361-49003411	MCF10A-Er-Src	breast:	n/a
32	chr11:49003361-49003411	BE2_C	brain:	n/a
33	chr11:49003361-49003411	RPTEC	kidney:	n/a
34	chr11:49003361-49003411	NH-A	brain:	n/a
35	chr11:49003361-49003411	NHDF-neo	bronchial:	n/a
36	chr11:49003361-49003411	CMK	blood:	n/a
37	chr11:49003361-49003411	HCF	heart:	n/a
38	chr11:49003361-49003411	ovcar-3	ovarian:	n/a
39	chr11:49003361-49003411	NB4	blood:	n/a
40	chr11:49003361-49003411	HMEC	breast:	n/a
41	chr11:49003361-49003411	NHBE	bronchial:	n/a
42	chr11:49003361-49003411	BJ	skin:	n/a
43	chr11:49003361-49003411	Jurkat	blood:	n/a
44	chr11:49003361-49003411	ECC-1	luminal epithelium:	n/a
45	chr11:49003361-49003411	HPAEpiC	pulmonary alveolar:	n/a
46	chr11:49003361-49003411	HNPCEpiC	eye:	n/a
47	chr11:49003361-49003411	HRPEpiC	eye:	n/a
48	chr11:49003361-49003411	SK-N-MC	brain:	n/a
49	chr11:49003361-49003411	AG09319	gingival:	n/a
50	chr11:49003361-49003411	Caco-2	colon:	n/a

No data

Variant related genes	Relation type
TRIM51GP	CpG island

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759824	chr11:48303671-49185190	Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv2757441	chr11:48365757-49068634	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv897376	chr11:48719507-49027070	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1828260	chr11:48735614-49162948	Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv897393	chr11:48765567-49009877	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv427886	chr11:48850348-49185190	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	esv2758268	chr11:48856977-49185190	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv2760205	chr11:48886523-49006938	Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv897404	chr11:48901553-49003921	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv554325	chr11:48911660-49030187	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv897413	chr11:48924826-49003921	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv897428	chr11:48929921-49003921	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv897429	chr11:48929921-49009877	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv897430	chr11:48929921-49042866	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv897431	chr11:48929921-49068145	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv897442	chr11:48933763-49027070	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv897454	chr11:48937824-49003921	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv897461	chr11:48939960-49003921	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv897466	chr11:48941067-49003921	ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv897480	chr11:48978778-49042866	Inactive region	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv975173	chr11:48986181-49016905	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
23	nsv897481	chr11:48987539-49111467	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv832145	chr11:49002873-49185190	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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