Variant report

Variant	rs534008226
Chromosome Location	chr15:75075319-75075320
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:29)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75073376..75079113-chr15:75130007..75137097,15	MCF-7	breast:
2	chr15:75073135..75075746-chr15:75163972..75165852,2	K562	blood:
3	chr15:74927868..74930219-chr15:75074349..75076958,3	MCF-7	breast:
4	chr15:75074174..75075858-chr15:75112738..75114767,2	MCF-7	breast:
5	chr15:75075306..75077471-chr15:75113085..75115871,2	K562	blood:
6	chr15:75073526..75075460-chr15:75228949..75230471,2	MCF-7	breast:
7	chr15:75075073..75076597-chr15:75243005..75244574,2	MCF-7	breast:
8	chr15:75074126..75076948-chr15:75116903..75120530,4	MCF-7	breast:
9	chr15:75073924..75075938-chr17:37855960..37858891,2	MCF-7	breast:
10	chr15:75072788..75075776-chr15:75181274..75184204,2	K562	blood:
11	chr15:75072512..75079183-chr15:75180576..75186728,11	MCF-7	breast:
12	chr15:75073435..75075467-chr15:75197436..75200109,2	K562	blood:
13	chr15:75073170..75080511-chr15:75126432..75130376,7	MCF-7	breast:
14	chr15:75073739..75076026-chr15:75228940..75231737,2	MCF-7	breast:
15	chr15:75074194..75076388-chr15:75195576..75199734,3	MCF-7	breast:
16	chr15:75072694..75075868-chr15:75228655..75230932,4	K562	blood:
17	chr15:75072740..75076753-chr15:75116483..75119304,4	MCF-7	breast:
18	chr15:75072694..75075672-chr15:75228478..75230738,4	K562	blood:
19	chr15:75074533..75077400-chr15:75247038..75249331,2	MCF-7	breast:
20	chr15:75074533..75077222-chr15:75090764..75094129,5	MCF-7	breast:
21	chr15:74927915..74930465-chr15:75075287..75077377,2	MCF-7	breast:
22	chr15:75074156..75079604-chr15:75107384..75112501,9	MCF-7	breast:
23	chr15:75072350..75078841-chr15:75107920..75114107,12	MCF-7	breast:
24	chr15:75065380..75067175-chr15:75075106..75076815,2	K562	blood:
25	chr15:75074806..75076876-chr15:75192504..75194161,2	K562	blood:
26	chr15:75072788..75075776-chr15:75181274..75184204,3	K562	blood:
27	chr15:74915721..74919302-chr15:75074662..75077539,3	MCF-7	breast:
28	chr15:75074461..75076806-chr15:75112062..75114585,2	K562	blood:
29	chr15:75072261..75077453-chr15:75091040..75094267,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140506	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000261606	Chromatin interaction
ENSG00000141736	Chromatin interaction
ENSG00000179151	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000178741	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000213578	Chromatin interaction
ENSG00000140474	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv3373735	chr15:75073424-75076272	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
4	esv3407516	chr15:75073449-75075972	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75073600-75076400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr15:75073800-75075600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:75073800-75076200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr15:75073800-75076200	Active TSS	Small Intestine	intestine
5	chr15:75073800-75076600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:75074000-75075400	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr15:75074000-75075400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:75074000-75075400	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr15:75074000-75075600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr15:75074000-75076000	Active TSS	Primary T cells from cord blood	blood
11	chr15:75074000-75076200	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr15:75074000-75076400	Active TSS	Fetal Kidney	kidney
13	chr15:75074000-75077000	Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr15:75074200-75075400	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr15:75074200-75075400	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr15:75074200-75075400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:75074200-75075400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:75074200-75075400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:75074200-75075400	Active TSS	Primary T cells fromperipheralblood	blood
20	chr15:75074200-75075400	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr15:75074200-75075400	Active TSS	Gastric	stomach
22	chr15:75074200-75075400	Active TSS	Left Ventricle	heart
23	chr15:75074200-75075400	Active TSS	Right Atrium	heart
24	chr15:75074200-75075400	Active TSS	Thymus	Thymus
25	chr15:75074200-75075400	Active TSS	A549	lung
26	chr15:75074200-75075400	Active TSS	HUVEC	blood vessel
27	chr15:75074200-75075400	Active TSS	NHLF	lung
28	chr15:75074200-75075600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:75074200-75075600	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr15:75074200-75075600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:75074200-75075600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:75074200-75075600	Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr15:75074200-75075600	Active TSS	Muscle Satellite Cultured Cells	--
34	chr15:75074200-75075600	Active TSS	Esophagus	oesophagus
35	chr15:75074200-75075600	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr15:75074200-75075600	Active TSS	GM12878-XiMat	blood
37	chr15:75074200-75075600	Active TSS	HSMM	muscle
38	chr15:75074200-75075600	Active TSS	Monocytes-CD14+_RO01746	blood
39	chr15:75074200-75075800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
40	chr15:75074200-75075800	Active TSS	Primary B cells from peripheral blood	blood
41	chr15:75074200-75075800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:75074200-75076000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr15:75074200-75076200	Active TSS	HSMMtube	muscle
44	chr15:75074200-75076800	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr15:75074200-75077000	Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr15:75074400-75075600	Active TSS	Primary monocytes fromperipheralblood	blood
47	chr15:75074400-75075600	Active TSS	Ovary	ovary
48	chr15:75074400-75075800	Active TSS	Aorta	Aorta
49	chr15:75074800-75077400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:75075000-75075400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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