Variant report

Variant	rs534085586
Chromosome Location	chr6:80889699-80889700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80888084..80890010-chr6:80891656..80894939,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv524214	chr6:80853873-80892427	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80836400-80891200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:80837000-80895200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:80841200-80895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:80842200-80914200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:80853800-80891800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:80855200-80907000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:80855200-80907200	Weak transcription	Ovary	ovary
8	chr6:80855400-80895400	Weak transcription	Fetal Stomach	stomach
9	chr6:80855800-80896000	Weak transcription	Aorta	Aorta
10	chr6:80863200-80907200	Weak transcription	Psoas Muscle	Psoas
11	chr6:80868600-80891200	Weak transcription	Pancreas	Pancrea
12	chr6:80871400-80895800	Weak transcription	Right Ventricle	heart
13	chr6:80874000-80891000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:80874000-80894000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:80874200-80899200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:80875000-80891200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:80875200-80893200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:80875400-80891200	Weak transcription	Hela-S3	cervix
19	chr6:80875600-80891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:80875800-80891200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:80877600-80895800	Weak transcription	Esophagus	oesophagus
22	chr6:80878000-80891200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:80878000-80921000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:80878600-80916000	Weak transcription	Adipose Nuclei	Adipose
25	chr6:80878800-80907200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:80878800-80914200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:80880600-80891200	Weak transcription	Fetal Heart	heart
28	chr6:80880600-80914200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr6:80882000-80891400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:80882000-80896200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:80882400-80935400	Weak transcription	Dnd41	blood
32	chr6:80882600-80892200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:80883800-80913200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:80884800-80891200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:80885000-80891200	Weak transcription	NHLF	lung
36	chr6:80885200-80891000	Weak transcription	HMEC	breast
37	chr6:80885400-80891800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:80885600-80891200	Weak transcription	GM12878-XiMat	blood
39	chr6:80885800-80891200	Weak transcription	HSMMtube	muscle
40	chr6:80885800-80919000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:80886000-80891400	Weak transcription	Osteobl	bone
42	chr6:80886000-80891600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:80886000-80899000	Weak transcription	Liver	Liver
44	chr6:80886200-80891200	Weak transcription	Left Ventricle	heart
45	chr6:80886400-80890400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:80886800-80892800	Weak transcription	Primary T cells from cord blood	blood
47	chr6:80889400-80889800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:80889400-80889800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:80889400-80890000	Enhancers	NHDF-Ad	bronchial
50	chr6:80889400-80890200	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links