Variant report

Variant	rs534422165
Chromosome Location	chr11:86317748-86317749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86316921..86319182-chr11:86528850..86531026,2	MCF-7	breast:
2	chr11:86317084..86318773-chr11:86517876..86519532,2	MCF-7	breast:
3	chr11:86302794..86305608-chr11:86317191..86320162,2	K562	blood:
4	chr11:86316496..86321662-chr11:86508610..86513631,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv522823	chr11:86317519-86321576	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86300200-86318800	Weak transcription	Esophagus	oesophagus
2	chr11:86307000-86317800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86308800-86321600	Weak transcription	Left Ventricle	heart
4	chr11:86309400-86321600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:86315600-86318800	Weak transcription	Fetal Intestine Small	intestine
6	chr11:86315600-86319000	Weak transcription	Fetal Intestine Large	intestine
7	chr11:86316200-86320200	Enhancers	HUVEC	blood vessel
8	chr11:86316400-86317800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:86316400-86320400	Enhancers	Fetal Stomach	stomach
10	chr11:86316800-86319600	Enhancers	Fetal Brain Male	brain
11	chr11:86317000-86318400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:86317000-86318400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:86317000-86319000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:86317000-86319000	Enhancers	Right Ventricle	heart
15	chr11:86317000-86319200	Enhancers	Stomach Smooth Muscle	stomach
16	chr11:86317000-86319200	Enhancers	A549	lung
17	chr11:86317000-86319600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:86317000-86319600	Enhancers	Ovary	ovary
19	chr11:86317000-86319800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:86317000-86320200	Enhancers	Fetal Heart	heart
21	chr11:86317200-86318400	Enhancers	Fetal Brain Female	brain
22	chr11:86317200-86319000	Enhancers	Colon Smooth Muscle	Colon
23	chr11:86317200-86319200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:86317200-86319200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr11:86317200-86319800	Enhancers	Fetal Muscle Leg	muscle
26	chr11:86317200-86320400	Enhancers	Rectal Smooth Muscle	rectum
27	chr11:86317200-86320400	Enhancers	Hela-S3	cervix
28	chr11:86317400-86317800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr11:86317400-86317800	Enhancers	Psoas Muscle	Psoas
30	chr11:86317400-86318400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:86317400-86319200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:86317400-86319600	Enhancers	Aorta	Aorta
33	chr11:86317400-86319600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:86317400-86320000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:86317400-86320000	Enhancers	HSMM	muscle
36	chr11:86317400-86320000	Enhancers	NH-A	brain
37	chr11:86317400-86320000	Enhancers	NHDF-Ad	bronchial
38	chr11:86317400-86320200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:86317400-86321600	Weak transcription	Pancreas	Pancrea
40	chr11:86317600-86318200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr11:86317600-86318400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:86317600-86318400	Enhancers	HSMMtube	muscle
43	chr11:86317600-86318400	Enhancers	NHLF	lung
44	chr11:86317600-86318600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:86317600-86318800	Weak transcription	Right Atrium	heart
46	chr11:86317600-86319200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:86317600-86319600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr11:86317600-86320000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:86317600-86320000	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr11:86317600-86320000	Enhancers	NHEK	skin

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