Variant report

Variant	rs534644284
Chromosome Location	chr6:29648056-29648057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:29647949-29648120	K562	blood:	n/a	chr6:29648056-29648066 chr6:29648059-29648067
2	ZNF143	chr6:29647975-29648202	H1-hESC	embryonic stem cell:	n/a	n/a
3	MYC	chr6:29647770-29648099	MCF10A-Er-Src	breast:	n/a	n/a
4	MAX	chr6:29648039-29648281	K562	blood:	n/a	chr6:29648221-29648230 chr6:29648220-29648231
5	YY1	chr6:29647863-29648474	GM12891	blood:	n/a	chr6:29648056-29648066 chr6:29648059-29648067 chr6:29648251-29648259
6	POLR2A	chr6:29647749-29649223	GM12891	blood:	n/a	n/a
7	JUND	chr6:29648027-29648062	K562	blood:	n/a	n/a

Variant related genes	Relation type
ZFP57	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv883530	chr6:29645038-29677641	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv10808	chr6:29648051-29653183	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
2	chr6:29643000-29648800	Enhancers	HMEC	breast
3	chr6:29643200-29648400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:29643400-29648400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:29645200-29648200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:29645200-29648400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:29645800-29648200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:29646000-29648400	Flanking Active TSS	NHEK	skin
9	chr6:29646000-29648800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:29646000-29651400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:29646200-29651400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:29646200-29651400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:29646400-29648400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:29646800-29651400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:29647000-29649600	Weak transcription	Spleen	Spleen
16	chr6:29647000-29651400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:29647000-29651400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:29647400-29648200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:29647400-29651600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:29647600-29649200	Active TSS	Fetal Heart	heart
21	chr6:29647800-29648200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr6:29647800-29648800	Flanking Bivalent TSS/Enh	Placenta	Placenta
23	chr6:29647800-29649000	Bivalent/Poised TSS	Colonic Mucosa	Colon
24	chr6:29648000-29648200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr6:29648000-29648200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:29648000-29648200	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr6:29648000-29648200	Bivalent Enhancer	K562	blood
28	chr6:29648000-29648600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:29648000-29648800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:29648000-29648800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:29648000-29649200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
32	chr6:29648000-29649200	Bivalent/Poised TSS	Primary T cells fromperipheralblood	blood
33	chr6:29648000-29651400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links