Variant report

Variant	rs534656903
Chromosome Location	chr13:39526050-39526051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1053818	chr13:39512274-39533011	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv983513	chr13:39521370-39526141	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2753642	chr13:39522300-39649000	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv520639	chr13:39525264-39529226	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39520200-39541600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:39521800-39526200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:39525400-39526400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr13:39525400-39526800	Weak transcription	Pancreas	Pancrea
5	chr13:39525800-39526400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:39525800-39526400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr13:39525800-39526400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr13:39525800-39526400	Flanking Active TSS	HUVEC	blood vessel
9	chr13:39525800-39526600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:39526000-39526200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:39526000-39526200	Active TSS	Adipose Nuclei	Adipose
12	chr13:39526000-39526200	Active TSS	Duodenum Mucosa	Duodenum
13	chr13:39526000-39526400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:39526000-39526400	Active TSS	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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