Variant report

Variant	rs534978669
Chromosome Location	chr6:35037076-35037077
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34482918..34485421-chr6:35035460..35037570,2	K562	blood:
2	chr6:35036943..35038797-chr6:35040859..35042394,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv965716	chr6:35036952-35039725	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35015800-35044200	Weak transcription	HMEC	breast
2	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
3	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
4	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
5	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:35018800-35038200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
9	chr6:35020200-35037600	Strong transcription	Fetal Intestine Large	intestine
10	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:35021000-35037600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr6:35021400-35037400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:35021800-35055400	Weak transcription	HSMM	muscle
14	chr6:35022600-35037200	Strong transcription	Gastric	stomach
15	chr6:35024000-35039200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:35024800-35062000	Weak transcription	A549	lung
17	chr6:35025200-35037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:35025600-35056000	Strong transcription	Liver	Liver
19	chr6:35026600-35059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:35028400-35048800	Weak transcription	Psoas Muscle	Psoas
21	chr6:35028600-35060000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:35028800-35045400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:35029000-35046200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:35029000-35050800	Weak transcription	NHLF	lung
25	chr6:35029200-35039800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:35029200-35045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:35029200-35046400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:35029400-35045200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr6:35029400-35046200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr6:35029400-35051400	Weak transcription	Stomach Mucosa	stomach
31	chr6:35029800-35051200	Weak transcription	Osteobl	bone
32	chr6:35030000-35047400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:35030600-35040600	Weak transcription	NHEK	skin
34	chr6:35030600-35045000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:35030600-35045000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:35031600-35040000	Weak transcription	HUVEC	blood vessel
37	chr6:35031600-35045000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:35032200-35040200	Weak transcription	Fetal Brain Female	brain
39	chr6:35032800-35051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:35033000-35050200	Weak transcription	Dnd41	blood
41	chr6:35033200-35046000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:35033400-35039600	Strong transcription	Lung	lung
43	chr6:35033600-35038800	Weak transcription	Primary B cells from cord blood	blood
44	chr6:35033800-35039400	Strong transcription	Fetal Muscle Trunk	muscle
45	chr6:35034400-35046200	Weak transcription	Fetal Thymus	thymus
46	chr6:35034600-35048200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr6:35034800-35037200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:35034800-35039200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr6:35034800-35039200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:35034800-35045800	Weak transcription	Brain Angular Gyrus	brain

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