Variant report

Variant	nsv965716
Chromosome Location	chr6:35036952-35039725
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35036943..35038797-chr6:35040859..35042394,2	MCF-7	breast:
2	chr6:35032635..35034931-chr6:35037985..35040100,2	MCF-7	breast:
3	chr6:34482918..34485421-chr6:35035460..35037570,2	K562	blood:

Extended variants
information (count: 115 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:115 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs530891209	chr6:35036953-35036954	Enhancers Genic enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs141191514	chr6:35036989-35036990	Enhancers Genic enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs557401265	chr6:35037001-35037002	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs74593059	chr6:35037064-35037065	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs534978669	chr6:35037076-35037077	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs546984017	chr6:35037077-35037078	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs568736765	chr6:35037089-35037090	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs535707049	chr6:35037166-35037167	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs557571010	chr6:35037167-35037168	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs575437525	chr6:35037184-35037185	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs372582837	chr6:35037319-35037320	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs574680008	chr6:35037327-35037328	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs539559432	chr6:35037331-35037332	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs557851054	chr6:35037367-35037368	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs57473655	chr6:35037379-35037380	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs187953882	chr6:35037396-35037397	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs557047614	chr6:35037405-35037406	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs377098103	chr6:35037478-35037479	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs199830686	chr6:35037483-35037484	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs200927411	chr6:35037495-35037496	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs1093987	chr6:35037496-35037497	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs554102326	chr6:35037497-35037498	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs573864587	chr6:35037498-35037499	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs1093986	chr6:35037606-35037607	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs192623997	chr6:35037608-35037609	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs9469935	chr6:35037690-35037691	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs545903929	chr6:35037703-35037704	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs573462729	chr6:35037718-35037719	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs564560289	chr6:35037743-35037744	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs183297209	chr6:35037744-35037745	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs200383175	chr6:35037801-35037802	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs71002523	chr6:35037820-35037821	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs1093985	chr6:35037839-35037840	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs113313715	chr6:35037975-35037976	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs529587229	chr6:35037991-35037992	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs77339510	chr6:35038000-35038001	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs2762335	chr6:35038086-35038087	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs186967896	chr6:35038121-35038122	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs557569987	chr6:35038130-35038131	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs566558585	chr6:35038170-35038171	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs192271979	chr6:35038177-35038178	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs184914254	chr6:35038199-35038200	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs2762336	chr6:35038216-35038217	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs544117241	chr6:35038243-35038244	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs142508781	chr6:35038259-35038260	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs562400007	chr6:35038260-35038261	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201381294	chr6:35038261-35038262	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556001545	chr6:35038278-35038279	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs61416020	chr6:35038286-35038287	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs386700103	chr6:35038297-35038298	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Glioblastoma multiforme	21510904	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
small cell lung cancer	17426248	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:213 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35015800-35044200	Weak transcription	HMEC	breast
2	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
3	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
4	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
5	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:35018800-35038200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
9	chr6:35020200-35037600	Strong transcription	Fetal Intestine Large	intestine
10	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:35021000-35037000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr6:35021000-35037600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:35021400-35037400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:35021800-35055400	Weak transcription	HSMM	muscle
15	chr6:35022600-35037200	Strong transcription	Gastric	stomach
16	chr6:35024000-35039200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:35024800-35062000	Weak transcription	A549	lung
18	chr6:35025200-35037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:35025600-35056000	Strong transcription	Liver	Liver
20	chr6:35026600-35059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:35028400-35048800	Weak transcription	Psoas Muscle	Psoas
22	chr6:35028600-35060000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:35028800-35045400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:35029000-35046200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:35029000-35050800	Weak transcription	NHLF	lung
26	chr6:35029200-35039800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:35029200-35045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:35029200-35046400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:35029400-35045200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:35029400-35046200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr6:35029400-35051400	Weak transcription	Stomach Mucosa	stomach
32	chr6:35029800-35051200	Weak transcription	Osteobl	bone
33	chr6:35030000-35047400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:35030600-35040600	Weak transcription	NHEK	skin
35	chr6:35030600-35045000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:35030600-35045000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr6:35031600-35040000	Weak transcription	HUVEC	blood vessel
38	chr6:35031600-35045000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:35032200-35040200	Weak transcription	Fetal Brain Female	brain
40	chr6:35032800-35051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:35033000-35050200	Weak transcription	Dnd41	blood
42	chr6:35033200-35046000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:35033400-35039600	Strong transcription	Lung	lung
44	chr6:35033600-35038800	Weak transcription	Primary B cells from cord blood	blood
45	chr6:35033800-35039400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr6:35034400-35037000	Genic enhancers	Spleen	Spleen
47	chr6:35034400-35046200	Weak transcription	Fetal Thymus	thymus
48	chr6:35034600-35048200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr6:35034800-35037200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:35034800-35039200	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links