Variant report

Variant	rs1093986
Chromosome Location	chr6:35037606-35037607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35036943..35038797-chr6:35040859..35042394,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11552398	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13196771	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13203612	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13206654	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13207848	0.88[EUR][1000 genomes]
rs13208078	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13214114	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13216424	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16871749	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16871809	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16871814	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1747516	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1747517	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17610836	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2177382	0.82[EUR][1000 genomes]
rs2234044	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2395608	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2494098	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2762336	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2820225	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34069418	0.81[ASN][1000 genomes]
rs34103100	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34208177	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34250961	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34715060	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34930033	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35095464	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35693439	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3756856	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs41270050	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4628094	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57111149	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66579470	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67167177	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67638810	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67941146	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6899618	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6906666	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6913286	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6913975	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6926532	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6936337	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6942104	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs728238	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72896254	0.81[ASN][1000 genomes]
rs72897804	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7766770	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7767073	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs820061	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820062	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820063	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820065	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820066	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820067	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820069	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820072	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs820077	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs820083	0.81[ASN][1000 genomes]
rs820095	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs820099	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs820100	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs820101	0.93[EUR][1000 genomes]
rs820103	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs843937	0.81[ASN][1000 genomes]
rs865352	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs865353	0.82[AFR][1000 genomes]
rs9462053	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9462054	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9469950	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv965716	chr6:35036952-35039725	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35015800-35044200	Weak transcription	HMEC	breast
2	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
3	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
4	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
5	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:35018800-35038200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
9	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:35021800-35055400	Weak transcription	HSMM	muscle
11	chr6:35024000-35039200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:35024800-35062000	Weak transcription	A549	lung
13	chr6:35025600-35056000	Strong transcription	Liver	Liver
14	chr6:35026600-35059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:35028400-35048800	Weak transcription	Psoas Muscle	Psoas
16	chr6:35028600-35060000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:35028800-35045400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:35029000-35046200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:35029000-35050800	Weak transcription	NHLF	lung
20	chr6:35029200-35039800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:35029200-35045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:35029200-35046400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:35029400-35045200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:35029400-35046200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:35029400-35051400	Weak transcription	Stomach Mucosa	stomach
26	chr6:35029800-35051200	Weak transcription	Osteobl	bone
27	chr6:35030000-35047400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:35030600-35040600	Weak transcription	NHEK	skin
29	chr6:35030600-35045000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:35030600-35045000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:35031600-35040000	Weak transcription	HUVEC	blood vessel
32	chr6:35031600-35045000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr6:35032200-35040200	Weak transcription	Fetal Brain Female	brain
34	chr6:35032800-35051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:35033000-35050200	Weak transcription	Dnd41	blood
36	chr6:35033200-35046000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:35033400-35039600	Strong transcription	Lung	lung
38	chr6:35033600-35038800	Weak transcription	Primary B cells from cord blood	blood
39	chr6:35033800-35039400	Strong transcription	Fetal Muscle Trunk	muscle
40	chr6:35034400-35046200	Weak transcription	Fetal Thymus	thymus
41	chr6:35034600-35048200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:35034800-35039200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:35034800-35039200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:35034800-35045800	Weak transcription	Brain Angular Gyrus	brain
45	chr6:35035000-35039000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:35035000-35039000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr6:35035000-35039400	Weak transcription	Aorta	Aorta
48	chr6:35035000-35040200	Weak transcription	Brain Anterior Caudate	brain
49	chr6:35035000-35045000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:35035200-35038800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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