Variant report

Variant	rs820100
Chromosome Location	chr6:35046154-35046155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35039881..35041859-chr6:35044532..35047324,2	K562	blood:
2	chr6:35045958..35049879-chr6:35052642..35055370,3	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1093986	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11552398	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196771	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13203612	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206654	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207848	0.90[EUR][1000 genomes]
rs13208078	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13214114	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13216424	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13219307	0.83[ASN][1000 genomes]
rs16871749	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871809	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871814	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16896559	0.86[ASN][1000 genomes]
rs1747516	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1747517	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17610836	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17611877	0.97[ASN][1000 genomes]
rs2177382	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2234044	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395608	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2494098	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2762336	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820225	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34069418	0.89[ASN][1000 genomes]
rs34103100	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34208177	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34250961	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34715060	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34930033	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35095464	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35693439	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3756856	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41270050	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4628094	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57111149	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66579470	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66753029	0.80[EUR][1000 genomes]
rs67167177	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67638810	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67941146	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6899618	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906666	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913286	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913975	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926532	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936337	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942104	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728238	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896254	0.89[ASN][1000 genomes]
rs72897804	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901705	0.98[ASN][1000 genomes]
rs7766770	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7767073	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820061	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820062	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820063	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820065	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820066	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820067	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820069	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs820072	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs820077	0.85[AMR][1000 genomes]
rs820083	0.86[ASN][1000 genomes]
rs820095	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs820099	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820101	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820103	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843937	0.86[ASN][1000 genomes]
rs865352	0.84[AMR][1000 genomes]
rs9462053	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462054	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9469950	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
2	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
3	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
4	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
7	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:35021800-35055400	Weak transcription	HSMM	muscle
9	chr6:35024800-35062000	Weak transcription	A549	lung
10	chr6:35025600-35056000	Strong transcription	Liver	Liver
11	chr6:35026600-35059200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:35028400-35048800	Weak transcription	Psoas Muscle	Psoas
13	chr6:35028600-35060000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:35029000-35046200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:35029000-35050800	Weak transcription	NHLF	lung
16	chr6:35029200-35046400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:35029400-35046200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:35029400-35051400	Weak transcription	Stomach Mucosa	stomach
19	chr6:35029800-35051200	Weak transcription	Osteobl	bone
20	chr6:35030000-35047400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:35032800-35051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:35033000-35050200	Weak transcription	Dnd41	blood
23	chr6:35034400-35046200	Weak transcription	Fetal Thymus	thymus
24	chr6:35034600-35048200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:35036200-35059200	Strong transcription	Primary T cells from cord blood	blood
26	chr6:35036600-35046400	Weak transcription	Fetal Lung	lung
27	chr6:35036800-35048000	Strong transcription	Fetal Muscle Leg	muscle
28	chr6:35036800-35056200	Strong transcription	Fetal Stomach	stomach
29	chr6:35037000-35048000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:35037000-35061800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:35037200-35050000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:35037200-35050000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:35038400-35048200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:35039200-35048400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr6:35039400-35050400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:35039400-35060600	Strong transcription	Fetal Intestine Large	intestine
37	chr6:35039600-35046400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:35039600-35048000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:35039600-35051000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:35039800-35049800	Weak transcription	Primary B cells from cord blood	blood
41	chr6:35039800-35051800	Strong transcription	HSMMtube	muscle
42	chr6:35040000-35046400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:35040000-35049200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:35040000-35057000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:35040200-35047200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:35040200-35048600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr6:35040600-35049200	Weak transcription	HUVEC	blood vessel
48	chr6:35040800-35048200	Strong transcription	Spleen	Spleen
49	chr6:35040800-35049000	Strong transcription	Lung	lung
50	chr6:35041000-35046600	Weak transcription	Brain Anterior Caudate	brain

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