Variant report

Variant	rs16896559
Chromosome Location	chr6:35004133-35004134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35002561..35006786-chr6:35010332..35014287,4	K562	blood:
2	chr6:34998385..35000765-chr6:35002872..35004521,2	MCF-7	breast:
3	chr6:35002495..35005140-chr6:35015377..35017563,2	K562	blood:
4	chr6:34994556..34998578-chr6:34998827..35004744,6	K562	blood:
5	chr6:34980740..34983781-chr6:35003942..35006125,3	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1051115	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11552398	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11961798	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11964930	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13196771	0.86[ASN][1000 genomes]
rs13196785	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs13199238	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13203612	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13205210	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs13206654	0.86[ASN][1000 genomes]
rs13207848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs13211490	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13214114	0.86[ASN][1000 genomes]
rs13216424	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13217848	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13219307	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16871749	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16871809	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16871814	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1747516	0.86[ASN][1000 genomes]
rs1747517	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17610836	0.86[ASN][1000 genomes]
rs17611877	0.89[ASN][1000 genomes]
rs2177380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2177382	0.80[ASN][1000 genomes]
rs2234044	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2234045	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2395608	0.82[ASN][1000 genomes]
rs2395610	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2494098	0.83[ASN][1000 genomes]
rs2762336	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2820225	0.85[ASN][1000 genomes]
rs34069418	0.97[ASN][1000 genomes]
rs34103100	0.86[ASN][1000 genomes]
rs34208177	0.86[ASN][1000 genomes]
rs34250961	0.86[ASN][1000 genomes]
rs34715060	0.86[ASN][1000 genomes]
rs34930033	0.86[ASN][1000 genomes]
rs35095464	0.86[ASN][1000 genomes]
rs35693439	0.86[ASN][1000 genomes]
rs3734261	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs3734266	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs3756856	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs41270050	0.86[ASN][1000 genomes]
rs4628094	0.86[ASN][1000 genomes]
rs4646933	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs57111149	0.86[ASN][1000 genomes]
rs6457797	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs66579470	0.86[ASN][1000 genomes]
rs67167177	0.86[ASN][1000 genomes]
rs67638810	0.86[ASN][1000 genomes]
rs67941146	0.83[ASN][1000 genomes]
rs6899618	0.86[ASN][1000 genomes]
rs6906666	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6913286	0.86[ASN][1000 genomes]
rs6913975	0.86[ASN][1000 genomes]
rs6915649	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6925175	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6926532	0.86[ASN][1000 genomes]
rs6936337	0.86[ASN][1000 genomes]
rs6942104	0.86[ASN][1000 genomes]
rs728238	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs72896254	0.97[ASN][1000 genomes]
rs72897804	0.86[ASN][1000 genomes]
rs72901705	0.87[ASN][1000 genomes]
rs7739385	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7743949	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7761391	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7766770	0.86[ASN][1000 genomes]
rs7767073	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs820061	0.91[ASN][1000 genomes]
rs820062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs820063	0.91[ASN][1000 genomes]
rs820065	0.92[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs820066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs820067	0.91[ASN][1000 genomes]
rs820069	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs820072	0.91[ASN][1000 genomes]
rs820077	0.84[CHB][hapmap]
rs820083	0.91[ASN][1000 genomes]
rs820095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs820099	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs820100	0.86[ASN][1000 genomes]
rs820101	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs820103	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs843937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9462053	0.86[ASN][1000 genomes]
rs9462054	0.86[ASN][1000 genomes]
rs9469950	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:34986400-35011800	Weak transcription	Dnd41	blood
5	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:34987000-35009000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:34987400-35015800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:34992800-35011800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:34993800-35006000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:34993800-35014600	Weak transcription	Fetal Brain Male	brain
12	chr6:34994200-35014400	Weak transcription	NHLF	lung
13	chr6:34994400-35005400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:34994600-35036000	Weak transcription	K562	blood
15	chr6:34995000-35005600	Weak transcription	Osteobl	bone
16	chr6:34995000-35005800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:34995000-35013800	Weak transcription	Hela-S3	cervix
18	chr6:34996000-35015200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:34996200-35005400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:34996200-35010000	Weak transcription	Ovary	ovary
21	chr6:34997800-35004800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:34998600-35008000	Weak transcription	Brain Angular Gyrus	brain
23	chr6:34998800-35004400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr6:34999000-35005600	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr6:34999000-35008600	Weak transcription	Primary B cells from cord blood	blood
26	chr6:34999400-35007400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:34999800-35005000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr6:34999800-35007400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:34999800-35014600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr6:35000200-35004800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:35000200-35005600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:35000600-35008200	Weak transcription	HepG2	liver
33	chr6:35001000-35004600	Enhancers	Brain Anterior Caudate	brain
34	chr6:35001000-35005600	Genic enhancers	HSMMtube	muscle
35	chr6:35001000-35005800	Enhancers	Aorta	Aorta
36	chr6:35001400-35004200	Genic enhancers	Left Ventricle	heart
37	chr6:35001400-35004200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr6:35001400-35005800	Enhancers	Right Ventricle	heart
39	chr6:35001600-35004400	Enhancers	Stomach Mucosa	stomach
40	chr6:35001600-35004400	Enhancers	HUVEC	blood vessel
41	chr6:35001600-35004600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr6:35001600-35004800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr6:35001600-35005400	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr6:35001600-35006000	Enhancers	Right Atrium	heart
45	chr6:35001800-35004200	Enhancers	Spleen	Spleen
46	chr6:35001800-35004200	Enhancers	HMEC	breast
47	chr6:35001800-35006400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:35002000-35004200	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr6:35002000-35004400	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr6:35002000-35004800	Enhancers	Adipose Nuclei	Adipose

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