Variant report

Variant	rs34715060
Chromosome Location	chr6:35107781-35107782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34954286..34954970-chr6:35107397..35108331,5	MCF-7	breast:
2	chr6:35107459..35108346-chr6:35172584..35173465,3	K562	blood:
3	chr6:35048678..35049279-chr6:35107435..35108070,2	MCF-7	breast:
4	chr6:34131718..34132244-chr6:35107029..35108249,3	K562	blood:
5	chr6:34949770..34950538-chr6:35107405..35108299,2	K562	blood:
6	chr6:35100917..35102494-chr6:35106098..35107816,2	MCF-7	breast:
7	chr6:35107772..35108596-chr6:35208578..35209321,2	MCF-7	breast:
8	chr6:34954226..34955209-chr6:35107125..35108338,9	K562	blood:
9	chr6:34949753..34950779-chr6:35107305..35108332,7	MCF-7	breast:
10	chr6:34163737..34164672-chr6:35107392..35107985,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000264241	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1093986	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11552398	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13196771	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203612	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13206654	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13207848	0.81[EUR][1000 genomes]
rs13208078	0.80[EUR][1000 genomes]
rs13214114	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13216424	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13219307	0.81[ASN][1000 genomes]
rs16871749	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16871809	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16871814	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16896559	0.86[ASN][1000 genomes]
rs1747516	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1747517	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17610836	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17611877	0.97[ASN][1000 genomes]
rs2177382	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2234044	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2395608	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2494098	0.81[ASN][1000 genomes]
rs2762336	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2820225	0.84[ASN][1000 genomes]
rs34069418	0.86[ASN][1000 genomes]
rs34103100	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34208177	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34250961	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34930033	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35095464	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35106671	0.83[EUR][1000 genomes]
rs35693439	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756856	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270050	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4628094	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57111149	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66579470	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67167177	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67638810	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67941146	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6899618	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6906666	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913286	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913975	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6926532	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6936337	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6942104	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs728238	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72896254	0.86[ASN][1000 genomes]
rs72897804	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72901705	0.98[ASN][1000 genomes]
rs7766770	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767073	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820061	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs820062	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs820063	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs820065	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs820066	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs820067	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs820069	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs820072	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs820083	0.83[ASN][1000 genomes]
rs820095	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs820099	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820100	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs820101	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs820103	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs843937	0.86[ASN][1000 genomes]
rs9462053	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462054	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469950	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34715060	TCP11	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35104000-35108600	Weak transcription	Ovary	ovary
2	chr6:35104200-35108000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:35104200-35108000	Weak transcription	Fetal Lung	lung
4	chr6:35104400-35114000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:35105000-35108800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:35106000-35108000	Weak transcription	Adipose Nuclei	Adipose
7	chr6:35106000-35110400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:35106000-35113600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:35106200-35108000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:35106200-35113400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:35106600-35107800	Weak transcription	Brain Anterior Caudate	brain
12	chr6:35107000-35108000	Enhancers	HepG2	liver
13	chr6:35107000-35108200	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:35107200-35108000	Enhancers	Brain Hippocampus Middle	brain
15	chr6:35107200-35108200	Enhancers	Fetal Intestine Large	intestine
16	chr6:35107200-35108200	Enhancers	Fetal Intestine Small	intestine
17	chr6:35107200-35108400	Enhancers	Fetal Stomach	stomach
18	chr6:35107200-35108800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:35107400-35108200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:35107400-35108200	Enhancers	Liver	Liver
21	chr6:35107400-35109600	Enhancers	Stomach Mucosa	stomach
22	chr6:35107400-35110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:35107600-35108200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:35107600-35108600	Weak transcription	Colonic Mucosa	Colon
25	chr6:35107600-35108600	Enhancers	Fetal Heart	heart

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