Variant report

Variant	rs535067283
Chromosome Location	chr13:76110470-76110471
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:76102775..76109881-chr13:76110381..76113047,9	MCF-7	breast:
2	chr13:76101020..76103303-chr13:76108939..76111291,2	K562	blood:
3	chr13:76109717..76113590-chr13:76122029..76126081,5	MCF-7	breast:
4	chr13:76101122..76104303-chr13:76108576..76110569,3	K562	blood:
5	chr13:76109113..76111805-chr13:76112674..76114626,2	K562	blood:
6	chr13:76055248..76057886-chr13:76110224..76112780,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261553	Chromatin interaction
ENSG00000136111	Chromatin interaction
ENSG00000118939	Chromatin interaction
ENSG00000188243	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv900562	chr13:76072743-76176680	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900563	chr13:76093935-76169347	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv900564	chr13:76100090-76156136	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	esv3326553	chr13:76106251-76120849	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3346687	chr13:76106451-76115149	Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3363843	chr13:76106551-76113949	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv14404	chr13:76107773-76119573	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv2596575	chr13:76109159-76111338	Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv1833250	chr13:76109534-76117768	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv442676	chr13:76109534-76117768	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	esv2760289	chr13:76109536-76117768	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76095800-76111400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:76096600-76111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:76097000-76111000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:76097000-76111600	Weak transcription	Spleen	Spleen
5	chr13:76097800-76110600	Weak transcription	Fetal Brain Male	brain
6	chr13:76097800-76110600	Weak transcription	Fetal Kidney	kidney
7	chr13:76097800-76110600	Weak transcription	Psoas Muscle	Psoas
8	chr13:76097800-76111200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr13:76098000-76110600	Weak transcription	Brain Anterior Caudate	brain
10	chr13:76098000-76110600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr13:76098000-76111200	Weak transcription	Aorta	Aorta
12	chr13:76098600-76111000	Weak transcription	Colonic Mucosa	Colon
13	chr13:76098800-76111400	Weak transcription	Esophagus	oesophagus
14	chr13:76099600-76111000	Weak transcription	K562	blood
15	chr13:76100000-76110600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr13:76100000-76111200	Weak transcription	Ovary	ovary
17	chr13:76100200-76110600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr13:76100400-76110600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr13:76100800-76110600	Weak transcription	Right Ventricle	heart
20	chr13:76103600-76111000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr13:76104000-76110600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr13:76105000-76110600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr13:76105000-76111200	Weak transcription	Stomach Mucosa	stomach
24	chr13:76105200-76110600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr13:76105200-76110600	Weak transcription	NHDF-Ad	bronchial
26	chr13:76106200-76110600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr13:76106200-76110600	Strong transcription	Fetal Thymus	thymus
28	chr13:76107200-76110600	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr13:76107200-76110800	Strong transcription	Fetal Stomach	stomach
30	chr13:76107600-76110600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr13:76107600-76110600	Strong transcription	HMEC	breast
32	chr13:76107600-76111000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr13:76108000-76110600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr13:76108000-76110800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr13:76108000-76111000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr13:76108400-76110800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr13:76108400-76110800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr13:76108600-76110600	Weak transcription	Hela-S3	cervix
39	chr13:76108800-76110600	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr13:76109000-76111000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr13:76109200-76111000	Enhancers	Primary T cells fromperipheralblood	blood
42	chr13:76109200-76111400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr13:76109400-76110600	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr13:76109400-76110600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr13:76109400-76110600	Genic enhancers	HepG2	liver
46	chr13:76109400-76111000	Weak transcription	Placenta	Placenta
47	chr13:76109600-76110600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr13:76109600-76110600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr13:76109600-76110600	Enhancers	Brain Germinal Matrix	brain
50	chr13:76109600-76110800	Enhancers	Primary T cells from cord blood	blood

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