Variant report

Variant	rs535067742
Chromosome Location	chr14:71786866-71786867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:71786853-71788718	HepG2	liver:	n/a	n/a
2	EGR1	chr14:71786840-71787820	H1-hESC	embryonic stem cell:	n/a	chr14:71787700-71787722 chr14:71787286-71787297 chr14:71787492-71787502 chr14:71787285-71787295 chr14:71787709-71787719 chr14:71787366-71787375 chr14:71787436-71787446 chr14:71786993-71787002 chr14:71787195-71787204 chr14:71787705-71787718 chr14:71787286-71787295 chr14:71787365-71787378 chr14:71787285-71787298 chr14:71787706-71787715 chr14:71787286-71787296 chr14:71787280-71787302 chr14:71787285-71787298 chr14:71787487-71787509 chr14:71787285-71787298 chr14:71787492-71787505 chr14:71787285-71787298 chr14:71787491-71787506 chr14:71787284-71787298 chr14:71787286-71787296
3	POLR2A	chr14:71786820-71788234	K562	blood:	n/a	n/a
4	HA-E2F1	chr14:71786862-71788310	Hela-S3	cervix:	n/a	chr14:71787710-71787719 chr14:71787014-71787024 chr14:71787285-71787295 chr14:71787361-71787373 chr14:71787926-71787935
5	POLR2A	chr14:71786724-71788644	ECC-1	luminal epithelium:	n/a	n/a
6	CHD2	chr14:71786665-71787435	K562	blood:	n/a	chr14:71787028-71787037
7	SP1	chr14:71786836-71787389	GM12878	blood:	n/a	chr14:71787364-71787373
8	EP300	chr14:71786777-71787238	SK-N-SH_RA	brain:	n/a	chr14:71787008-71787024
9	CTCF	chr14:71786840-71786990	HEEpiC	esophagus:	n/a	n/a
10	POLR2A	chr14:71786751-71788219	A549	lung:	n/a	n/a
11	MAX	chr14:71786604-71788409	A549	lung:	n/a	chr14:71787309-71787319
12	POLR2A	chr14:71786722-71788947	Hela-S3	cervix:	n/a	n/a
13	MAX	chr14:71786809-71787397	K562	blood:	n/a	chr14:71787309-71787319
14	POLR2A	chr14:71786827-71787468	HUVEC	blood vessel:	n/a	n/a
15	HCFC1	chr14:71786847-71787420	K562	blood:	n/a	n/a
16	SRF	chr14:71786631-71787144	GM12878	blood:	n/a	chr14:71786756-71786769 chr14:71786751-71786768 chr14:71786754-71786768 chr14:71786758-71786767 chr14:71786757-71786774 chr14:71786757-71786771 chr14:71786861-71786871
17	POLR2A	chr14:71786738-71787433	SK-N-MC	brain:	n/a	n/a
18	RAD21	chr14:71786396-71787375	H1-hESC	embryonic stem cell:	n/a	chr14:71787005-71787018 chr14:71787277-71787290
19	RCOR1	chr14:71786509-71787418	GM12878	blood:	n/a	n/a
20	MXI1	chr14:71786388-71787382	GM12878	blood:	n/a	chr14:71786940-71786955 chr14:71786938-71786953
21	POLR2A	chr14:71786859-71787395	H1-hESC	embryonic stem cell:	n/a	n/a
22	YY1	chr14:71786767-71787401	HepG2	liver:	n/a	chr14:71787284-71787298 chr14:71787285-71787299
23	TAF1	chr14:71786863-71787476	A549	lung:	n/a	n/a
24	MYC	chr14:71786853-71787437	MCF-7	breast:	n/a	chr14:71787309-71787319
25	POLR2A	chr14:71786630-71788232	HUVEC	blood vessel:	n/a	n/a
26	CTCF	chr14:71786863-71786918	Fibrobl	skin:	n/a	n/a
27	MAX	chr14:71786758-71787561	SK-N-SH	brain:	n/a	chr14:71787309-71787319
28	ELF1	chr14:71786803-71787226	HepG2	liver:	n/a	chr14:71786992-71787005
29	CCNT2	chr14:71786795-71788289	K562	blood:	n/a	chr14:71787977-71787986 chr14:71787390-71787399
30	ARID3A	chr14:71786747-71787215	HepG2	liver:	n/a	n/a
31	CTCF	chr14:71786780-71786930	AG04449	skin:	n/a	n/a
32	TAF1	chr14:71786691-71788586	ECC-1	luminal epithelium:	n/a	n/a
33	POLR2A	chr14:71786769-71788029	HCT-116	colon:	n/a	n/a
34	GATA3	chr14:71786599-71787615	A549	lung:	n/a	chr14:71787333-71787343
35	PML	chr14:71786510-71789130	GM12878	blood:	n/a	chr14:71787820-71787828 chr14:71786649-71786657
36	POLR2A	chr14:71786553-71788996	HepG2	liver:	n/a	n/a
37	POLR2A	chr14:71786698-71789008	GM12878	blood:	n/a	n/a
38	SPI1	chr14:71786858-71787160	K562	blood:	n/a	chr14:71786993-71787006
39	JUN	chr14:71786712-71787530	K562	blood:	n/a	chr14:71787516-71787525
40	SPI1	chr14:71786829-71787410	GM12891	blood:	n/a	chr14:71786993-71787006
41	BRCA1	chr14:71786666-71787220	H1-hESC	embryonic stem cell:	n/a	chr14:71787028-71787037
42	EGR1	chr14:71786701-71788362	HCT-116	colon:	n/a	chr14:71788096-71788105 chr14:71787700-71787722 chr14:71787286-71787297 chr14:71787492-71787502 chr14:71787285-71787295 chr14:71787709-71787719 chr14:71787366-71787375 chr14:71787436-71787446 chr14:71786993-71787002 chr14:71788066-71788076 chr14:71787195-71787204 chr14:71787705-71787718 chr14:71787286-71787295 chr14:71787365-71787378 chr14:71787285-71787298 chr14:71788063-71788076 chr14:71788101-71788110 chr14:71787706-71787715 chr14:71787286-71787296 chr14:71788066-71788075 chr14:71787280-71787302 chr14:71787285-71787298 chr14:71787487-71787509 chr14:71787285-71787298 chr14:71787492-71787505 chr14:71787285-71787298 chr14:71787491-71787506 chr14:71787284-71787298 chr14:71787286-71787296 chr14:71787929-71787942
43	POLR2A	chr14:71786730-71788992	GM18526	blood:	n/a	n/a
44	TEAD4	chr14:71786687-71787132	H1-hESC	embryonic stem cell:	n/a	n/a
45	EP300	chr14:71786854-71787407	GM12878	blood:	n/a	chr14:71787008-71787024
46	POLR2A	chr14:71786467-71789037	GM12891	blood:	n/a	n/a
47	POLR2A	chr14:71786818-71788201	K562	blood:	n/a	n/a
48	RFX5	chr14:71786805-71787029	K562	blood:	n/a	chr14:71786941-71786956 chr14:71786939-71786954 chr14:71786939-71786954 chr14:71786938-71786955 chr14:71786942-71786956 chr14:71786939-71786954
49	POLR2A	chr14:71786832-71788211	Gliobla	brain:	n/a	n/a
50	POLR2A	chr14:71786866-71787936	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:71786623..71788661-chr14:71864889..71866852,2	MCF-7	breast:
2	chr14:71647115..71649453-chr14:71786412..71788278,2	MCF-7	breast:
3	chr14:71780085..71783168-chr14:71784973..71787067,3	K562	blood:
4	chr14:71776798..71778756-chr14:71785140..71789113,3	MCF-7	breast:
5	chr14:71786721..71787223-chr19:9929449..9930057,2	NB4	blood:

Variant related genes	Relation type
SIPA1L1	TF binding region
ENSG00000127452	Chromatin interaction
ENSG00000259907	Chromatin interaction
ENSG00000259146	Chromatin interaction
ENSG00000207444	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv3405849	chr14:71786224-71789072	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1831401	chr14:71786411-71845264	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3417213	chr14:71786699-71788597	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71786000-71789200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr14:71786200-71787000	Flanking Active TSS	Liver	Liver
3	chr14:71786200-71787000	Flanking Active TSS	GM12878-XiMat	blood
4	chr14:71786200-71788600	Active TSS	Fetal Stomach	stomach
5	chr14:71786200-71789000	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr14:71786200-71789200	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr14:71786200-71789200	Active TSS	Stomach Smooth Muscle	stomach
8	chr14:71786200-71789600	Active TSS	Rectal Smooth Muscle	rectum
9	chr14:71786200-71790000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:71786400-71787000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr14:71786400-71787000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr14:71786400-71787000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr14:71786400-71787000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr14:71786400-71787000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:71786400-71787000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
16	chr14:71786400-71787000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr14:71786400-71787000	Flanking Active TSS	Thymus	Thymus
18	chr14:71786400-71787000	Enhancers	Spleen	Spleen
19	chr14:71786400-71787000	Flanking Active TSS	Dnd41	blood
20	chr14:71786400-71787000	Flanking Active TSS	HMEC	breast
21	chr14:71786400-71787000	Flanking Active TSS	HUVEC	blood vessel
22	chr14:71786400-71787000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr14:71786400-71787200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:71786400-71787400	Active TSS	Fetal Brain Male	brain
25	chr14:71786400-71787600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:71786400-71787800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:71786400-71788200	Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr14:71786400-71788200	Active TSS	Fetal Brain Female	brain
29	chr14:71786400-71788800	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr14:71786400-71788800	Active TSS	Right Ventricle	heart
31	chr14:71786400-71789000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:71786400-71789000	Active TSS	H9 Cell Line	embryonic stem cell
33	chr14:71786400-71789000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr14:71786400-71789000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr14:71786400-71789000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:71786400-71789000	Active TSS	Colonic Mucosa	Colon
37	chr14:71786400-71789000	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr14:71786400-71789000	Active TSS	Right Atrium	heart
39	chr14:71786400-71789200	Active TSS	ES-I3 Cell Line	embryonic stem cell
40	chr14:71786400-71789400	Active TSS	Brain Angular Gyrus	brain
41	chr14:71786400-71789600	Active TSS	H1 Cell Line	embryonic stem cell
42	chr14:71786400-71789800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr14:71786400-71789800	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr14:71786400-71790000	Active TSS	Brain Hippocampus Middle	brain
45	chr14:71786400-71790000	Active TSS	HSMM	muscle
46	chr14:71786400-71790000	Active TSS	HSMMtube	muscle
47	chr14:71786400-71790200	Active TSS	Stomach Mucosa	stomach
48	chr14:71786600-71787000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
49	chr14:71786600-71787000	Flanking Active TSS	Primary B cells from peripheral blood	blood
50	chr14:71786600-71787000	Flanking Active TSS	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links