Variant report

Variant	rs535108488
Chromosome Location	chr11:106828952-106828953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1818906	chr11:106786428-106831384	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv1806517	chr11:106828741-106831970	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106809000-106830400	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:106822000-106829600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:106825400-106836200	Weak transcription	Fetal Brain Male	brain
4	chr11:106827200-106832600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:106827400-106832200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:106827400-106832400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:106827400-106832800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:106827600-106829600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:106827800-106830200	Enhancers	Fetal Heart	heart
10	chr11:106828200-106830200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:106828200-106830400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:106828200-106831800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:106828400-106829400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:106828400-106829400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:106828400-106829600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:106828400-106829600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:106828400-106829600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:106828400-106830200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:106828400-106830200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:106828400-106830200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:106828400-106831600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:106828400-106832400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:106828400-106832600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr11:106828400-106840200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:106828600-106833000	Enhancers	Fetal Lung	lung
27	chr11:106828800-106829000	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links